SNP Profiles of CRU 111   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACAGAGCTCCCCCTGGCTCCTT
1._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
2._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
3._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
4._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
5._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
6._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
7._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
8._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
9._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
10._NA_95___
AA____ACAGAGCTCCCCCTGGCTCCTT
11._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
12._NA_95___
AAAATTACAGAGCTCCCCCTGGCTCCTT
13._NA_95___
AAAATTAC________CCCTGG__CC__
14._NA_95___
AAAATTAC________CCCTGG__CC__
15._NA_95___
AAAATTAC________CCCTGG__CC__
16._NA_95___
AAAATTAC________CCCTGG__CC__
17._NA_95___
AAAATTAC________CCCTGG__CC__
18._NA_95___
AAAATTAC________CCCTGG__CC__
19._NA_95___
AAAATTAC________CCCTGG__CC__
20._NA_95___
AAAATTAC________CCCTGG__CC__
21._NA_95___
AAAATTAC________CCCTGG__CC__
22._NA_95___
AAAATTAC________CCCTGG__CC__
23._NA_95___
AAAATTAC________CCCTGG__CC__
24._NA_95___
AAAATTAC________CCCTGG__CC__
25._NA_95___
AA____AC________CCCTGG__CC__
26._NA_95___
AAAATTCC________CTTTGG__CC__
27._NA_95___
AAAATTCC________CTTTGG__CC__
28._NA_95___
AAAATTCC__GGCCCCCTTTGGTTCCCC
29._NA_95___
AAAATTCCGGGGCCCCCTTTGGTTCCCC
30._NA_95___
AACCTTAA________CCCCGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAAAGGCGGGCTAGTTATATCGGG
1._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
2._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
3._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
4._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
5._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
6._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
7._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
8._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
9._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
10._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
11._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
12._NA_95___
AACCAAAAGGCGGGCTAGTTATATCGGG
13._NA_95___
______AA____GG______ATAT__GG
14._NA_95___
______AA____GG______ATAT__GG
15._NA_95___
______AA____GG______ATAT__GG
16._NA_95___
______AA____GG______ATAT__GG
17._NA_95___
______AA____GG______ATAT__GG
18._NA_95___
______AA____GG______ATAT__GG
19._NA_95___
______AA____GG______ATAT__GG
20._NA_95___
______AA____GG______ATAT__GG
21._NA_95___
______AA____GG______ATAT__GG
22._NA_95___
______AA____GG______ATAT__GG
23._NA_95___
______AA____GG______ATAT__GG
24._NA_95___
______AA____GG______ATAT__GG
25._NA_95___
______AA____GG______ATAT__GG
26._NA_95___
______AA____GG______TTAA__GG
27._NA_95___
______AA____GG______TTAA__GG
28._NA_95___
ATCCAAAAGGCGGGTTAATTTTAACCGG
29._NA_95___
ATCCAAAAGGCGGGTTAATTTTAACCGG
30._NA_95___
______GG____GG______TTAA__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACTGTAGCCCCAGTTGGGTAACCAGCC
1._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
2._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
3._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
4._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
5._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
6._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
7._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
8._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
9._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
10._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
11._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
12._NA_95___
AACTGTAGCCCCAGTTGGGTAACCAGCC
13._NA_95___
AA______CC__AGTT____AA______
14._NA_95___
AA______CC__AGTT____AA______
15._NA_95___
AA______CC__AGTT____AA______
16._NA_95___
AA______CC__AGTT____AA______
17._NA_95___
AA______CC__AGTT____AA______
18._NA_95___
AA______CC__AGTT____AA______
19._NA_95___
AA______CC__AGTT____AA______
20._NA_95___
AA______CC__AGTT____AA______
21._NA_95___
AA______CC__AGTT____AA______
22._NA_95___
AA______CC__AGTT____AA______
23._NA_95___
AA______CC__AGTT____AA______
24._NA_95___
AA______CC__AGTT____AA______
25._NA_95___
AA______CC__AGTT____AA______
26._NA_95___
AA______CC__GGGT____AA______
27._NA_95___
AA______CC__GGGT____AA______
28._NA_95___
AATTGGAGCCAAGGGTGGTTAATTAACC
29._NA_95___
AATTGGAGCCAAGGGTGGTTAATTAACC
30._NA_95___
AT______GG__AGGT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCTAAAGAGCTCCGGAGGGCCCCGT
1._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
2._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
3._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
4._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
5._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
6._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
7._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
8._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
9._NA_95___
GTATCTAAAG__CTCCGGAGGGCCCCGT
10._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
11._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
12._NA_95___
GTATCTAAAGAGCTCCGGAGGGCCCCGT
13._NA_95___
____CT________________CCCC__
14._NA_95___
____CT________________CCCC__
15._NA_95___
____CT________________CCCC__
16._NA_95___
____CT________________CCCC__
17._NA_95___
____CT________________CCCC__
18._NA_95___
____CT________________CCCC__
19._NA_95___
____CT________________CCCC__
20._NA_95___
____CT________________CCCC__
21._NA_95___
____CT________________CCCC__
22._NA_95___
____CT________________CCCC__
23._NA_95___
____CT________________CCCC__
24._NA_95___
____CT________________CCCC__
25._NA_95___
____CT________________CCCC__
26._NA_95___
____CC________________CTTT__
27._NA_95___
____CC________________CTTT__
28._NA_95___
TTAACCGGAGAGCTCCGGGGTTCTTTGT
29._NA_95___
TTAACCGGAGAGCTCCGGGGTTCTTTGT
30._NA_95___
____TT________________CCCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCCCTACGGAGCCAATTGTGGCTCC
1._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
2._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
3._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
4._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
5._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
6._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
7._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
8._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
9._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
10._NA_95___
AGCGCCCTACGGAGCCAATTGTGGCTCC
11._NA_95___
AGCGCCCTACGG__CCAATTGTGGCTCC
12._NA_95___
AGCGCCCTACGGAG__AATTGTGGCTCC
13._NA_95___
__CG__CTACGG__CCAATTGT______
14._NA_95___
__CG__CTACGG__CCAATTGT______
15._NA_95___
__CG__CTACGG__CCAATTGT______
16._NA_95___
__CG__CTACGG__CCAATTGT______
17._NA_95___
__CG__CTACGG__CCAATTGT______
18._NA_95___
__CG__CTACGG__CCAATTGT______
19._NA_95___
__CG__CTACGG__CCAATTGT______
20._NA_95___
__CG__CTACGG__CCAATTGT______
21._NA_95___
__CG__CTACGG__CCAATTGT______
22._NA_95___
__CG__CTACGG__CCAATTGT______
23._NA_95___
__CG__CTACGG__CCAATTGT______
24._NA_95___
__CG__CTACGG____AATTGT______
25._NA_95___
__CG__CTACGG__CCAATTGT______
26._NA_95___
__CC__CCACGG__ACAGTTGG______
27._NA_95___
__CC__CCACGG__ACAGTTGG______
28._NA_95___
AGCCTTCCACGGGGACAGTTGGGGTTCC
29._NA_95___
AGCCTTCCACGGGGACAGTTGGGGTTCC
30._NA_95___
__CC__TTAAGG__ACAAGGGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTACAGACAAAACCCGCCTTACTTCT
1._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
2._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
3._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
4._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
5._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
6._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
7._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
8._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
9._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
10._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
11._NA_95___
GGTTACAGACAAAACCCG__TTACTTCT
12._NA_95___
GGTTACAGACAAAACCCGCCTTACTTCT
13._NA_95___
GGTT__________CCCG______TTCT
14._NA_95___
GGTT__________CCCG______TTCT
15._NA_95___
GGTT__________CCCG______TTCT
16._NA_95___
GGTT__________CCCG______TTCT
17._NA_95___
GGTT__________CCCG______TTCT
18._NA_95___
GGTT__________CCCG______TTCT
19._NA_95___
GGTT__________CCCG______TTCT
20._NA_95___
GGTT__________CCCG______TTCT
21._NA_95___
GGTT__________CCCG______TTCT
22._NA_95___
GGTT__________CCCG______TTCT
23._NA_95___
GGTT__________CCCG______TTCT
24._NA_95___
GGTT__________CCCG______TTCT
25._NA_95___
GGTT__________CCCG______TTCT
26._NA_95___
GGTT__________CCGG______TTCT
27._NA_95___
GGTT__________CCGG______TTCT
28._NA_95___
GGTTAAAAACAAAACCGGCCAAAATTCT
29._NA_95___
GGTTAAAAACAAAACCGGCCAAAATTCT
30._NA_95___
AACC__________CCCC______CCTT
 85 86 87 88 89 90 91 92 93      
_Input profile
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
1._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
2._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
3._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
4._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
5._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
6._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
7._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
8._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
9._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
10._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
11._NA_95___
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
12._NA_95___
TT__AGCTCTGTTTAAGGX_XX_XX_XX_XX_X
13._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
14._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
15._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
16._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
17._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
18._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
19._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
20._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
21._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
22._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
23._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
24._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
25._NA_95___
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
26._NA_95___
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
27._NA_95___
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
28._NA_95___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
29._NA_95___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
30._NA_95___
CC__AA__CCTTTT____X_XX_XX_XX_XX_X

Input profile: NA_95 GC-08-168-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._NA_95 GC-01-122-6-19

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._NA_95 GC-08-168-4-11

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._NA_95 GC-01-122-6-19

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._NA_95 GC-01-122-6-19

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

14._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

15._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

16._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

17._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

18._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

19._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

20._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

21._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

22._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

23._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

24._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

25._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

26._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

27._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

28._NA_95 GC-08-168-4-11

70.7 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._NA_95 GC-01-122-6-19

70.4 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

30._NA_95

56.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240