SNP Profiles of NA-95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGCCCCCTTTGGTTCCCCAT
1._GC-01-122-6-19
AAAATTCCGGCCCCCTTTGGTTCCCCAT
2._NA_95
AAAATTCC______CTTTGG__CC____
3._NA_95
AAAATTCC______CTTTGG__CC____
4._NA_95
AAAATTAC______CCCTGG__CC____
5._NA_95
AAAATTAC______CCCTGG__CC____
6._NA_95
AAAATTAC______CCCTGG__CC____
7._NA_95
AAAATTAC______CCCTGG__CC____
8._NA_95
AAAATTAC______CCCTGG__CC____
9._NA_95
AAAATTAC______CCCTGG__CC____
10._NA_95
AAAATTAC______CCCTGG__CC____
11._NA_95
AAAATTAC______CCCTGG__CC____
12._NA_95
AAAATTAC______CCCTGG__CC____
13._NA_95
AAAATTAC______CCCTGG__CC____
14._NA_95
AAAATTAC______CCCTGG__CC____
15._NA_95
AAAATTAC______CCCTGG__CC____
16._NA_95
AA____AC______CCCTGG__CC____
17._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
18._GC-01-122-6-19
AAAATTACAGCTCCCCCTGGCTCCTTAA
19._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
20._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
21._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
22._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
23._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
24._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
25._GC-01-122-6-19
AAAATTACAGCTCCCCCTGGCTCCTTAA
26._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
27._GC-01-122-6-19
AAAATTACAGCTCCCCCTGGCTCCTTAA
28._GC-08-168-4-11
AAAATTACAGCTCCCCCTGGCTCCTTAA
29._GC-08-168-4-11
AA____ACAGCTCCCCCTGGCTCCTTAA
30._NA_95
AACCTTAA______CCCCGG__CT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAAAAGGCGGGTTAATTGGTTAACCGG
1._GC-01-122-6-19
CCAAAAGGCGGGTTAATTGGTTAACCGG
2._NA_95
____AA____GG________TTAA__GG
3._NA_95
____AA____GG________TTAA__GG
4._NA_95
____AA____GG________ATAT__GG
5._NA_95
____AA____GG________ATAT__GG
6._NA_95
____AA____GG________ATAT__GG
7._NA_95
____AA____GG________ATAT__GG
8._NA_95
____AA____GG________ATAT__GG
9._NA_95
____AA____GG________ATAT__GG
10._NA_95
____AA____GG________ATAT__GG
11._NA_95
____AA____GG________ATAT__GG
12._NA_95
____AA____GG________ATAT__GG
13._NA_95
____AA____GG________ATAT__GG
14._NA_95
____AA____GG________ATAT__GG
15._NA_95
____AA____GG________ATAT__GG
16._NA_95
____AA____GG________ATAT__GG
17._GC-08-168-4-11
CCAAAAGGCGGGCTAGTT__ATATCGGG
18._GC-01-122-6-19
CCAAAAGGCGGGCTAGTT__ATATCGGG
19._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
20._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
21._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
22._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
23._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
24._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
25._GC-01-122-6-19
CCAAAAGGCGGGCTAGTTAGATATCGGG
26._GC-08-168-4-11
CCAAAAGGCGGGCTAGTT__ATATCGGG
27._GC-01-122-6-19
CCAAAAGGCGGGCTAGTTAGATATCGGG
28._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
29._GC-08-168-4-11
CCAAAAGGCGGGCTAGTTAGATATCGGG
30._NA_95
____GG____GG________TTAA__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAGCCAAGGGTGGTTAATTAACC
1._GC-01-122-6-19
AATTGGAGCCAAGGGTGGTTAATTAACC
2._NA_95
AA______CC__GGGT____AA______
3._NA_95
AA______CC__GGGT____AA______
4._NA_95
AA______CC__AGTT____AA______
5._NA_95
AA______CC__AGTT____AA______
6._NA_95
AA______CC__AGTT____AA______
7._NA_95
AA______CC__AGTT____AA______
8._NA_95
AA______CC__AGTT____AA______
9._NA_95
AA______CC__AGTT____AA______
10._NA_95
AA______CC__AGTT____AA______
11._NA_95
AA______CC__AGTT____AA______
12._NA_95
AA______CC__AGTT____AA______
13._NA_95
AA______CC__AGTT____AA______
14._NA_95
AA______CC__AGTT____AA______
15._NA_95
AA______CC__AGTT____AA______
16._NA_95
AA______CC__AGTT____AA______
17._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
18._GC-01-122-6-19
AACTGTAGCCCCAGTTGGGTAACCAGCC
19._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
20._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
21._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
22._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
23._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
24._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
25._GC-01-122-6-19
AACTGTAGCCCCAGTTGGGTAACCAGCC
26._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
27._GC-01-122-6-19
AACTGTAGCCCCAGTTGGGTAACCAGCC
28._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
29._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
30._NA_95
AT______GG__AGGT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAACCGGAGAGCTCCGGGGTTTTCTTT
1._GC-01-122-6-19
TTAACCGGAGAGCTCCGGGGTTTTCTTT
2._NA_95
____CC__________________CTTT
3._NA_95
____CC__________________CTTT
4._NA_95
____CT__________________CCCC
5._NA_95
____CT__________________CCCC
6._NA_95
____CT__________________CCCC
7._NA_95
____CT__________________CCCC
8._NA_95
____CT__________________CCCC
9._NA_95
____CT__________________CCCC
10._NA_95
____CT__________________CCCC
11._NA_95
____CT__________________CCCC
12._NA_95
____CT__________________CCCC
13._NA_95
____CT__________________CCCC
14._NA_95
____CT__________________CCCC
15._NA_95
____CT__________________CCCC
16._NA_95
____CT__________________CCCC
17._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
18._GC-01-122-6-19
GTATCTAAAGAGCTCCGGAGGGTTCCCC
19._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
20._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
21._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
22._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
23._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
24._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
25._GC-01-122-6-19
GTATCTAAAGAGCTCCGGAGGGTTCCCC
26._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGG__CCCC
27._GC-01-122-6-19
GTATCTAAAGAGCTCCGGAGGGTTCCCC
28._GC-08-168-4-11
GTATCTAAAG__CTCCGGAGGGTTCCCC
29._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
30._NA_95
____TT__________________CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCCTTCCACGGGGACAGTTGGGGTT
1._GC-01-122-6-19
GTAGCCTTCCACGGGGACAGTTGGGGTT
2._NA_95
____CC__CCACGG__ACAGTTGG____
3._NA_95
____CC__CCACGG__ACAGTTGG____
4._NA_95
____CG__CTACGG____AATTGT____
5._NA_95
____CG__CTACGG__CCAATTGT____
6._NA_95
____CG__CTACGG__CCAATTGT____
7._NA_95
____CG__CTACGG__CCAATTGT____
8._NA_95
____CG__CTACGG__CCAATTGT____
9._NA_95
____CG__CTACGG__CCAATTGT____
10._NA_95
____CG__CTACGG__CCAATTGT____
11._NA_95
____CG__CTACGG__CCAATTGT____
12._NA_95
____CG__CTACGG__CCAATTGT____
13._NA_95
____CG__CTACGG__CCAATTGT____
14._NA_95
____CG__CTACGG__CCAATTGT____
15._NA_95
____CG__CTACGG__CCAATTGT____
16._NA_95
____CG__CTACGG__CCAATTGT____
17._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
18._GC-01-122-6-19
GTAGCGCCCTACGG__CCAATTGTGGCT
19._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
20._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
21._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
22._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
23._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
24._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
25._GC-01-122-6-19
GTAGCGCCCTACGGAGCCAATTGTGGCT
26._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
27._GC-01-122-6-19
GTAGCGCCCTACGGAG__AATTGTGGCT
28._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
29._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
30._NA_95
____CC__TTAAGG__ACAAGGGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTAAAAACAAAACCGGCCAAAATT
1._GC-01-122-6-19
CCGGTTAAAAACAAAACCGGCCAAAATT
2._NA_95
__GGTT__________CCGG______TT
3._NA_95
__GGTT__________CCGG______TT
4._NA_95
__GGTT__________CCCG______TT
5._NA_95
__GGTT__________CCCG______TT
6._NA_95
__GGTT__________CCCG______TT
7._NA_95
__GGTT__________CCCG______TT
8._NA_95
__GGTT__________CCCG______TT
9._NA_95
__GGTT__________CCCG______TT
10._NA_95
__GGTT__________CCCG______TT
11._NA_95
__GGTT__________CCCG______TT
12._NA_95
__GGTT__________CCCG______TT
13._NA_95
__GGTT__________CCCG______TT
14._NA_95
__GGTT__________CCCG______TT
15._NA_95
__GGTT__________CCCG______TT
16._NA_95
__GGTT__________CCCG______TT
17._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
18._GC-01-122-6-19
CCGGTTACAGACAAAACCCG__TTACTT
19._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
20._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
21._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
22._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
23._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
24._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
25._GC-01-122-6-19
CCGGTTACAGACAAAACCCGCCTTACTT
26._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
27._GC-01-122-6-19
CCGGTTACAGACAAAACCCGCCTTACTT
28._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
29._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
30._NA_95
__AACC__________CCCC______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._GC-01-122-6-19
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._NA_95
CTTT__AA__CCTTTT____X_XX_XX_XX_X
3._NA_95
CTTT__AA__CCTTTT____X_XX_XX_XX_X
4._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
5._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
6._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
7._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
8._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
9._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
10._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
11._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
12._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
13._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
14._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
15._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
16._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
17._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
18._GC-01-122-6-19
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
19._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
20._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
21._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
22._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
23._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
24._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
25._GC-01-122-6-19
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
26._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
27._GC-01-122-6-19
CTTT__AGCTCTGTTTAAGGX_XX_XX_XX_X
28._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
29._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
30._NA_95
TTCC__AA__CCTTTT____X_XX_XX_XX_X

Input profile: NA_95 GC-08-168-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._NA_95 GC-01-122-6-19

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

3._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

4._NA_95

75.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

5._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

6._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

7._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

8._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

9._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

10._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

11._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

12._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

13._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

14._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

15._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

16._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

17._NA_95 GC-08-168-4-11

71 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._NA_95 GC-01-122-6-19

70.9 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

22._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._NA_95 GC-01-122-6-19

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._NA_95 GC-08-168-4-11

70.7 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

27._NA_95 GC-01-122-6-19

70.7 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._NA_95 GC-08-168-4-11

70.4 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._NA_95 GC-08-168-4-11

70.1 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._NA_95

53.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240