SNP Profiles of NA-95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACAGAGCTCCCCCTGGCTCCTTAACC
1._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
2._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
3._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
4._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
5._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
6._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
7._GC-01-122-6-19
AAACAGAGCTCCCCCTGGCTCCTTAACC
8._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
9._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
10._GC-08-168-4-11
AAACAGAGCTCCCCCTGGCTCCTTAACC
11._GC-01-122-6-19
AAACAGAGCTCCCCCTGGCTCCTTAACC
12._GC-01-122-6-19
AAACAGAGCTCCCCCTGGCTCCTTAACC
13._NA_95
AAAC________CCCTGG__CC______
14._NA_95
AAAC________CCCTGG__CC______
15._NA_95
AAAC________CCCTGG__CC______
16._NA_95
AAAC________CCCTGG__CC______
17._NA_95
AAAC________CCCTGG__CC______
18._NA_95
AAAC________CCCTGG__CC______
19._NA_95
AAAC________CCCTGG__CC______
20._NA_95
AAAC________CCCTGG__CC______
21._NA_95
AAAC________CCCTGG__CC______
22._NA_95
AAAC________CCCTGG__CC______
23._NA_95
AAAC________CCCTGG__CC______
24._NA_95
AAAC________CCCTGG__CC______
25._NA_95
AAAC________CCCTGG__CC______
26._NA_95
AACC________CTTTGG__CC______
27._NA_95
AACC________CTTTGG__CC______
28._GC-08-168-4-11
AACC__GGCCCCCTTTGGTTCCCCATCC
29._GC-01-122-6-19
AACCGGGGCCCCCTTTGGTTCCCCATCC
30._NA_95
AAAA________CCCCGG__CT______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGGGCTAGTTAGATATCGGGAA
1._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
2._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
3._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
4._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
5._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
6._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
7._GC-01-122-6-19
AAAAGGCGGGCTAGTTAGATATCGGGAA
8._GC-08-168-4-11
AAAAGGCGGGCTAGTTAGATATCGGGAA
9._GC-08-168-4-11
AAAAGGCGGGCTAGTT__ATATCGGGAA
10._GC-08-168-4-11
AAAAGGCGGGCTAGTT__ATATCGGGAA
11._GC-01-122-6-19
AAAAGGCGGGCTAGTTAGATATCGGGAA
12._GC-01-122-6-19
AAAAGGCGGGCTAGTT__ATATCGGGAA
13._NA_95
__AA____GG________ATAT__GGAA
14._NA_95
__AA____GG________ATAT__GGAA
15._NA_95
__AA____GG________ATAT__GGAA
16._NA_95
__AA____GG________ATAT__GGAA
17._NA_95
__AA____GG________ATAT__GGAA
18._NA_95
__AA____GG________ATAT__GGAA
19._NA_95
__AA____GG________ATAT__GGAA
20._NA_95
__AA____GG________ATAT__GGAA
21._NA_95
__AA____GG________ATAT__GGAA
22._NA_95
__AA____GG________ATAT__GGAA
23._NA_95
__AA____GG________ATAT__GGAA
24._NA_95
__AA____GG________ATAT__GGAA
25._NA_95
__AA____GG________ATAT__GGAA
26._NA_95
__AA____GG________TTAA__GGAA
27._NA_95
__AA____GG________TTAA__GGAA
28._GC-08-168-4-11
AAAAGGCGGGTTAATTGGTTAACCGGAA
29._GC-01-122-6-19
AAAAGGCGGGTTAATTGGTTAACCGGAA
30._NA_95
__GG____GG________TTAA__CGAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CTGTAGCCCCAGTTGGGTAACCAGCCGT
1._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
2._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
3._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
4._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
5._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
6._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
7._GC-01-122-6-19
CTGTAGCCCCAGTTGGGTAACCAGCCGT
8._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
9._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
10._GC-08-168-4-11
CTGTAGCCCCAGTTGGGTAACCAGCCGT
11._GC-01-122-6-19
CTGTAGCCCCAGTTGGGTAACCAGCCGT
12._GC-01-122-6-19
CTGTAGCCCCAGTTGGGTAACCAGCCGT
13._NA_95
______CC__AGTT____AA________
14._NA_95
______CC__AGTT____AA________
15._NA_95
______CC__AGTT____AA________
16._NA_95
______CC__AGTT____AA________
17._NA_95
______CC__AGTT____AA________
18._NA_95
______CC__AGTT____AA________
19._NA_95
______CC__AGTT____AA________
20._NA_95
______CC__AGTT____AA________
21._NA_95
______CC__AGTT____AA________
22._NA_95
______CC__AGTT____AA________
23._NA_95
______CC__AGTT____AA________
24._NA_95
______CC__AGTT____AA________
25._NA_95
______CC__AGTT____AA________
26._NA_95
______CC__GGGT____AA________
27._NA_95
______CC__GGGT____AA________
28._GC-08-168-4-11
TTGGAGCCAAGGGTGGTTAATTAACCTT
29._GC-01-122-6-19
TTGGAGCCAAGGGTGGTTAATTAACCTT
30._NA_95
______GG__AGGT____AA________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
1._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
2._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
3._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
4._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
5._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
6._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
7._GC-01-122-6-19
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
8._GC-08-168-4-11
ATCTAAAG__CTCCGGAGGGTTCCCCGT
9._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
10._GC-08-168-4-11
ATCTAAAGAGCTCCGGAGGG__CCCCGT
11._GC-01-122-6-19
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
12._GC-01-122-6-19
ATCTAAAGAGCTCCGGAGGGTTCCCCGT
13._NA_95
__CT__________________CCCC__
14._NA_95
__CT__________________CCCC__
15._NA_95
__CT__________________CCCC__
16._NA_95
__CT__________________CCCC__
17._NA_95
__CT__________________CCCC__
18._NA_95
__CT__________________CCCC__
19._NA_95
__CT__________________CCCC__
20._NA_95
__CT__________________CCCC__
21._NA_95
__CT__________________CCCC__
22._NA_95
__CT__________________CCCC__
23._NA_95
__CT__________________CCCC__
24._NA_95
__CT__________________CCCC__
25._NA_95
__CT__________________CCCC__
26._NA_95
__CC__________________CTTT__
27._NA_95
__CC__________________CTTT__
28._GC-08-168-4-11
AACCGGAGAGCTCCGGGGTTTTCTTTGT
29._GC-01-122-6-19
AACCGGAGAGCTCCGGGGTTTTCTTTGT
30._NA_95
__TT__________________CCCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCCCTACGGAGCCAATTGTGGCTCC
1._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
2._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
3._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
4._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
5._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
6._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
7._GC-01-122-6-19
AGCGCCCTACGGAGCCAATTGTGGCTCC
8._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
9._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
10._GC-08-168-4-11
AGCGCCCTACGGAGCCAATTGTGGCTCC
11._GC-01-122-6-19
AGCGCCCTACGGAG__AATTGTGGCTCC
12._GC-01-122-6-19
AGCGCCCTACGG__CCAATTGTGGCTCC
13._NA_95
__CG__CTACGG__CCAATTGT______
14._NA_95
__CG__CTACGG__CCAATTGT______
15._NA_95
__CG__CTACGG__CCAATTGT______
16._NA_95
__CG__CTACGG__CCAATTGT______
17._NA_95
__CG__CTACGG__CCAATTGT______
18._NA_95
__CG__CTACGG__CCAATTGT______
19._NA_95
__CG__CTACGG__CCAATTGT______
20._NA_95
__CG__CTACGG__CCAATTGT______
21._NA_95
__CG__CTACGG__CCAATTGT______
22._NA_95
__CG__CTACGG__CCAATTGT______
23._NA_95
__CG__CTACGG__CCAATTGT______
24._NA_95
__CG__CTACGG__CCAATTGT______
25._NA_95
__CG__CTACGG____AATTGT______
26._NA_95
__CC__CCACGG__ACAGTTGG______
27._NA_95
__CC__CCACGG__ACAGTTGG______
28._GC-08-168-4-11
AGCCTTCCACGGGGACAGTTGGGGTTCC
29._GC-01-122-6-19
AGCCTTCCACGGGGACAGTTGGGGTTCC
30._NA_95
__CC__TTAAGG__ACAAGGGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTACAGACAAAACCCGCCTTACTTCT
1._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
2._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
3._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
4._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
5._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
6._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
7._GC-01-122-6-19
GGTTACAGACAAAACCCGCCTTACTTCT
8._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
9._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
10._GC-08-168-4-11
GGTTACAGACAAAACCCGCCTTACTTCT
11._GC-01-122-6-19
GGTTACAGACAAAACCCGCCTTACTTCT
12._GC-01-122-6-19
GGTTACAGACAAAACCCG__TTACTTCT
13._NA_95
GGTT__________CCCG______TTCT
14._NA_95
GGTT__________CCCG______TTCT
15._NA_95
GGTT__________CCCG______TTCT
16._NA_95
GGTT__________CCCG______TTCT
17._NA_95
GGTT__________CCCG______TTCT
18._NA_95
GGTT__________CCCG______TTCT
19._NA_95
GGTT__________CCCG______TTCT
20._NA_95
GGTT__________CCCG______TTCT
21._NA_95
GGTT__________CCCG______TTCT
22._NA_95
GGTT__________CCCG______TTCT
23._NA_95
GGTT__________CCCG______TTCT
24._NA_95
GGTT__________CCCG______TTCT
25._NA_95
GGTT__________CCCG______TTCT
26._NA_95
GGTT__________CCGG______TTCT
27._NA_95
GGTT__________CCGG______TTCT
28._GC-08-168-4-11
GGTTAAAAACAAAACCGGCCAAAATTCT
29._GC-01-122-6-19
GGTTAAAAACAAAACCGGCCAAAATTCT
30._NA_95
AACC__________CCCC______CCTT
 85 86 87 88 89 90 91 92 93      
_Input profile
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-122-6-19
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
9._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
10._GC-08-168-4-11
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
11._GC-01-122-6-19
TT__AGCTCTGTTTAAGGX_XX_XX_XX_XX_X
12._GC-01-122-6-19
TTTTAGCTCTGTTTAAGGX_XX_XX_XX_XX_X
13._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
14._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
15._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
16._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
17._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
18._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
19._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
20._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
21._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
22._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
23._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
24._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
25._NA_95
TT__AG__CTGTTT____X_XX_XX_XX_XX_X
26._NA_95
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
27._NA_95
TT__AA__CCTTTT____X_XX_XX_XX_XX_X
28._GC-08-168-4-11
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
29._GC-01-122-6-19
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
30._NA_95
CC__AA__CCTTTT____X_XX_XX_XX_XX_X

Input profile: NA_95 GC-08-168-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._NA_95 GC-01-122-6-19

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._NA_95 GC-08-168-4-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._NA_95 GC-08-168-4-11

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._NA_95 GC-01-122-6-19

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

12._NA_95 GC-01-122-6-19

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

13._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

14._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

15._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

16._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

17._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

18._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

19._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

20._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

21._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

22._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

23._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

24._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

25._NA_95

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

26._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

27._NA_95

73.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

28._NA_95 GC-08-168-4-11

70.1 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._NA_95 GC-01-122-6-19

69.9 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

30._NA_95

56.6 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP591 3TcSNP42 4TcSNP418 5TcSNP702
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240