SNP Profiles of NA-95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACAGAGCTCCCCCTGGCTCCTT
1._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
2._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
3._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
4._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
5._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
6._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
7._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
8._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
9._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
10._GC-08-168-4-11
AA____ACAGAGCTCCCCCTGGCTCCTT
11._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
12._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
13._NA_95
AAAATTAC________CCCTGG__CC__
14._NA_95
AAAATTAC________CCCTGG__CC__
15._NA_95
AAAATTAC________CCCTGG__CC__
16._NA_95
AAAATTAC________CCCTGG__CC__
17._NA_95
AAAATTAC________CCCTGG__CC__
18._NA_95
AAAATTAC________CCCTGG__CC__
19._NA_95
AAAATTAC________CCCTGG__CC__
20._NA_95
AAAATTAC________CCCTGG__CC__
21._NA_95
AAAATTAC________CCCTGG__CC__
22._NA_95
AAAATTAC________CCCTGG__CC__
23._NA_95
AAAATTAC________CCCTGG__CC__
24._NA_95
AAAATTAC________CCCTGG__CC__
25._NA_95
AA____AC________CCCTGG__CC__
26._NA_95
AAAATTCC________CTTTGG__CC__
27._NA_95
AAAATTCC________CTTTGG__CC__
28._GC-08-168-4-11
AAAATTCC__GGCCCCCTTTGGTTCCCC
29._GC-01-122-6-19
AAAATTCCGGGGCCCCCTTTGGTTCCCC
30._NA_95
AACCTTAA________CCCCGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAAAGGCGGGCTAGTTATATCGGG
1._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
2._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
3._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
4._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
5._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
6._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
7._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTATATCGGG
8._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
9._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
10._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTATATCGGG
11._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTATATCGGG
12._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTATATCGGG
13._NA_95
______AA____GG______ATAT__GG
14._NA_95
______AA____GG______ATAT__GG
15._NA_95
______AA____GG______ATAT__GG
16._NA_95
______AA____GG______ATAT__GG
17._NA_95
______AA____GG______ATAT__GG
18._NA_95
______AA____GG______ATAT__GG
19._NA_95
______AA____GG______ATAT__GG
20._NA_95
______AA____GG______ATAT__GG
21._NA_95
______AA____GG______ATAT__GG
22._NA_95
______AA____GG______ATAT__GG
23._NA_95
______AA____GG______ATAT__GG
24._NA_95
______AA____GG______ATAT__GG
25._NA_95
______AA____GG______ATAT__GG
26._NA_95
______AA____GG______TTAA__GG
27._NA_95
______AA____GG______TTAA__GG
28._GC-08-168-4-11
ATCCAAAAGGCGGGTTAATTTTAACCGG
29._GC-01-122-6-19
ATCCAAAAGGCGGGTTAATTTTAACCGG
30._NA_95
______GG____GG______TTAA__CG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACTGTAGCCCCAGTTGGGTAACCAGCC
1._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
2._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
3._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
4._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
5._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
6._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
7._GC-01-122-6-19
AACTGTAGCCCCAGTTGGGTAACCAGCC
8._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
9._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
10._GC-08-168-4-11
AACTGTAGCCCCAGTTGGGTAACCAGCC
11._GC-01-122-6-19
AACTGTAGCCCCAGTTGGGTAACCAGCC
12._GC-01-122-6-19
AACTGTAGCCCCAGTTGGGTAACCAGCC
13._NA_95
AA______CC__AGTT____AA______
14._NA_95
AA______CC__AGTT____AA______
15._NA_95
AA______CC__AGTT____AA______
16._NA_95
AA______CC__AGTT____AA______
17._NA_95
AA______CC__AGTT____AA______
18._NA_95
AA______CC__AGTT____AA______
19._NA_95
AA______CC__AGTT____AA______
20._NA_95
AA______CC__AGTT____AA______
21._NA_95
AA______CC__AGTT____AA______
22._NA_95
AA______CC__AGTT____AA______
23._NA_95
AA______CC__AGTT____AA______
24._NA_95
AA______CC__AGTT____AA______
25._NA_95
AA______CC__AGTT____AA______
26._NA_95
AA______CC__GGGT____AA______
27._NA_95
AA______CC__GGGT____AA______
28._GC-08-168-4-11
AATTGGAGCCAAGGGTGGTTAATTAACC
29._GC-01-122-6-19
AATTGGAGCCAAGGGTGGTTAATTAACC
30._NA_95
AT______GG__AGGT____AA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCTAAAGAGCTCCGGAGGGTTCCCC
1._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
2._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
3._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
4._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
5._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
6._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
7._GC-01-122-6-19
GTATCTAAAGAGCTCCGGAGGGTTCCCC
8._GC-08-168-4-11
GTATCTAAAG__CTCCGGAGGGTTCCCC
9._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGG__CCCC
10._GC-08-168-4-11
GTATCTAAAGAGCTCCGGAGGGTTCCCC
11._GC-01-122-6-19
GTATCTAAAGAGCTCCGGAGGGTTCCCC
12._GC-01-122-6-19
GTATCTAAAGAGCTCCGGAGGGTTCCCC
13._NA_95
____CT__________________CCCC
14._NA_95
____CT__________________CCCC
15._NA_95
____CT__________________CCCC
16._NA_95
____CT__________________CCCC
17._NA_95
____CT__________________CCCC
18._NA_95
____CT__________________CCCC
19._NA_95
____CT__________________CCCC
20._NA_95
____CT__________________CCCC
21._NA_95
____CT__________________CCCC
22._NA_95
____CT__________________CCCC
23._NA_95
____CT__________________CCCC
24._NA_95
____CT__________________CCCC
25._NA_95
____CT__________________CCCC
26._NA_95
____CC__________________CTTT
27._NA_95
____CC__________________CTTT
28._GC-08-168-4-11
TTAACCGGAGAGCTCCGGGGTTTTCTTT
29._GC-01-122-6-19
TTAACCGGAGAGCTCCGGGGTTTTCTTT
30._NA_95
____TT__________________CCCC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCGCCCTACGGAGCCAATTGTGGCT
1._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
2._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
3._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
4._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
5._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
6._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
7._GC-01-122-6-19
GTAGCGCCCTACGGAGCCAATTGTGGCT
8._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
9._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
10._GC-08-168-4-11
GTAGCGCCCTACGGAGCCAATTGTGGCT
11._GC-01-122-6-19
GTAGCGCCCTACGG__CCAATTGTGGCT
12._GC-01-122-6-19
GTAGCGCCCTACGGAG__AATTGTGGCT
13._NA_95
____CG__CTACGG__CCAATTGT____
14._NA_95
____CG__CTACGG__CCAATTGT____
15._NA_95
____CG__CTACGG__CCAATTGT____
16._NA_95
____CG__CTACGG__CCAATTGT____
17._NA_95
____CG__CTACGG__CCAATTGT____
18._NA_95
____CG__CTACGG__CCAATTGT____
19._NA_95
____CG__CTACGG__CCAATTGT____
20._NA_95
____CG__CTACGG__CCAATTGT____
21._NA_95
____CG__CTACGG__CCAATTGT____
22._NA_95
____CG__CTACGG__CCAATTGT____
23._NA_95
____CG__CTACGG__CCAATTGT____
24._NA_95
____CG__CTACGG____AATTGT____
25._NA_95
____CG__CTACGG__CCAATTGT____
26._NA_95
____CC__CCACGG__ACAGTTGG____
27._NA_95
____CC__CCACGG__ACAGTTGG____
28._GC-08-168-4-11
GTAGCCTTCCACGGGGACAGTTGGGGTT
29._GC-01-122-6-19
GTAGCCTTCCACGGGGACAGTTGGGGTT
30._NA_95
____CC__TTAAGG__ACAAGGGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTACAGACAAAACCCGCCTTACTT
1._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
2._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
3._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
4._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
5._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
6._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
7._GC-01-122-6-19
CCGGTTACAGACAAAACCCGCCTTACTT
8._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
9._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
10._GC-08-168-4-11
CCGGTTACAGACAAAACCCGCCTTACTT
11._GC-01-122-6-19
CCGGTTACAGACAAAACCCG__TTACTT
12._GC-01-122-6-19
CCGGTTACAGACAAAACCCGCCTTACTT
13._NA_95
__GGTT__________CCCG______TT
14._NA_95
__GGTT__________CCCG______TT
15._NA_95
__GGTT__________CCCG______TT
16._NA_95
__GGTT__________CCCG______TT
17._NA_95
__GGTT__________CCCG______TT
18._NA_95
__GGTT__________CCCG______TT
19._NA_95
__GGTT__________CCCG______TT
20._NA_95
__GGTT__________CCCG______TT
21._NA_95
__GGTT__________CCCG______TT
22._NA_95
__GGTT__________CCCG______TT
23._NA_95
__GGTT__________CCCG______TT
24._NA_95
__GGTT__________CCCG______TT
25._NA_95
__GGTT__________CCCG______TT
26._NA_95
__GGTT__________CCGG______TT
27._NA_95
__GGTT__________CCGG______TT
28._GC-08-168-4-11
CCGGTTAAAAACAAAACCGGCCAAAATT
29._GC-01-122-6-19
CCGGTTAAAAACAAAACCGGCCAAAATT
30._NA_95
__AACC__________CCCC______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
1._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
2._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
3._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
4._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
5._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
6._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
7._GC-01-122-6-19
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
8._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
9._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
10._GC-08-168-4-11
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
11._GC-01-122-6-19
CTTTTTAGCTCTGTTTAAGGX_XX_XX_XX_X
12._GC-01-122-6-19
CTTT__AGCTCTGTTTAAGGX_XX_XX_XX_X
13._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
14._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
15._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
16._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
17._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
18._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
19._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
20._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
21._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
22._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
23._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
24._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
25._NA_95
CTTT__AG__CTGTTT____X_XX_XX_XX_X
26._NA_95
CTTT__AA__CCTTTT____X_XX_XX_XX_X
27._NA_95
CTTT__AA__CCTTTT____X_XX_XX_XX_X
28._GC-08-168-4-11
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
29._GC-01-122-6-19
CTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
30._NA_95
TTCC__AA__CCTTTT____X_XX_XX_XX_X

Input profile: NA_95 GC-08-168-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._NA_95 GC-01-122-6-19

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._NA_95 GC-08-168-4-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._NA_95 GC-01-122-6-19

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._NA_95 GC-01-122-6-19

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016

14._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

15._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

16._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

17._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

18._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

19._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

20._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

21._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

22._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

23._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

24._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

25._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

26._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

27._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016

28._NA_95 GC-08-168-4-11

71 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._NA_95 GC-01-122-6-19

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

30._NA_95

56.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240