SNP Profiles of LCTEEN-241 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
1._GC-08-269-8-41	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
2._GC-08-269-8-41	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
3._GC-08-269-8-41	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
4._GC-08-269-8-41	_	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	_
5._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
6._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
7._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
8._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
9._LCT_EEN_241	_	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
10._RUQ_185	_	_	CC	CC	_	_	CT	_	CC	_	_	-	TT	_
11._RUQ_185	AT	AA	CC	CC	_	_	_	_	CC	CT	AA	_	CT	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	TT	CG	CG
1._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	TT	CG	CG
2._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	TT	CG	CG
3._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	TT	CG	CG
4._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	_	CG	CG
5._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	AA	TT	_	CG
6._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	AA	TT	_	CG
7._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	AA	TT	_	CG
8._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	AA	TT	_	CG
9._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	AA	_	_	CG
10._RUQ_185	_	_	_	_	_	GG	_	_	_	_	_	TT	CC	CG
11._RUQ_185	_	_	_	GG	_	_	CG	_	_	_	AA	TT	_	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
1._GC-08-269-8-41	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
2._GC-08-269-8-41	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
3._GC-08-269-8-41	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
4._GC-08-269-8-41	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC
5._LCT_EEN_241	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
6._LCT_EEN_241	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
7._LCT_EEN_241	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
8._LCT_EEN_241	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
9._LCT_EEN_241	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_
10._RUQ_185	_	_	_	AG	GG	CC	AA	GG	_	_	GG	CC	_	_
11._RUQ_185	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC	TT
1._GC-08-269-8-41	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC	TT
2._GC-08-269-8-41	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC	TT
3._GC-08-269-8-41	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC	TT
4._GC-08-269-8-41	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC	TT
5._LCT_EEN_241	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
6._LCT_EEN_241	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
7._LCT_EEN_241	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
8._LCT_EEN_241	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
9._LCT_EEN_241	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_
10._RUQ_185	GG	TT	_	_	AG	_	_	_	_	_	_	TT	_	TT
11._RUQ_185	_	_	TT	_	_	_	_	_	_	_	_	TT	CC	_

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT	CC
1._GC-08-269-8-41	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT	CC
2._GC-08-269-8-41	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT	CC
3._GC-08-269-8-41	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT	CC
4._GC-08-269-8-41	GG	_	CC	TT	CC	_	AG	AA	AG	GG	GG	AA	CT	CC
5._LCT_EEN_241	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_	_
6._LCT_EEN_241	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_	_
7._LCT_EEN_241	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_	_
8._LCT_EEN_241	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_	_
9._LCT_EEN_241	_	_	_	TT	CC	_	_	AA	AG	GG	GG	_	_	_
10._RUQ_185	-	GG	CC	TT	CC	_	AG	AA	AG	GG	GG	AA	_	_
11._RUQ_185	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT	CC
1._GC-08-269-8-41	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT	CC
2._GC-08-269-8-41	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT	CC
3._GC-08-269-8-41	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT	CC
4._GC-08-269-8-41	_	CC	GG	AC	AC	GG	AC	CC	CC	_	CC	TT	CT	CC
5._LCT_EEN_241	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT	CC
6._LCT_EEN_241	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT	CC
7._LCT_EEN_241	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT	CC
8._LCT_EEN_241	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT	CC
9._LCT_EEN_241	_	_	_	_	_	_	AC	CC	_	_	_	TT	CT	CC
10._RUQ_185	_	_	_	_	_	_	AC	CC	_	_	CC	TT	_	_
11._RUQ_185	TT	_	_	_	_	_	AC	CC	_	_	_	CT	CT	CC

	85	86	87	88	89	90	91	92
_Input profile	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-269-8-41	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-269-8-41	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-269-8-41	TT	GG	CC	CC	_	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-269-8-41	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._LCT_EEN_241	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
6._LCT_EEN_241	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_241	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_241	_	GG	_	CC	_	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
9._LCT_EEN_241	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_185	_	GG	CC	CC	GG	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_185	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_241 GC-08-269-8-41

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._LCT_EEN_241 GC-08-269-8-41

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._LCT_EEN_241 GC-08-269-8-41

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

3._LCT_EEN_241 GC-08-269-8-41

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._LCT_EEN_241 GC-08-269-8-41

identical
85 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._LCT_EEN_241

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

6._LCT_EEN_241

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

7._LCT_EEN_241

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._LCT_EEN_241

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

9._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

10._LCT_EEN_241 RUQ_185

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

96.2 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240