SNP Profiles of LCTEEN-241 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	TT	CC
1._GC-08-269-8-41	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	TT	CC
2._GC-08-269-8-41	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	TT	CC
3._GC-08-269-8-41	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	TT	CC
4._GC-08-269-8-41	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	TT	CC
5._LCT_EEN_241	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_	_
6._LCT_EEN_241	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_	_
7._LCT_EEN_241	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_	_
8._LCT_EEN_241	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_	_
9._LCT_EEN_241	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_	_
10._RUQ_185	AA	CC	CC	_	_	_	_	CC	CT	AA	_	CT	_	_
11._RUQ_185	_	CC	CC	_	_	CT	_	CC	_	_	-	TT	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	GG	CG	CC	AA	CC	AA	CG	CG	AT	TT	TT
1._GC-08-269-8-41	AA	GG	CC	GG	CG	CC	AA	CC	AA	CG	CG	AT	TT	TT
2._GC-08-269-8-41	AA	GG	CC	GG	CG	CC	AA	CC	AA	CG	CG	AT	TT	TT
3._GC-08-269-8-41	AA	GG	CC	GG	CG	CC	AA	CC	AA	CG	CG	AT	TT	TT
4._GC-08-269-8-41	AA	GG	CC	GG	CG	CC	AA	CC	AA	CG	CG	AT	TT	TT
5._LCT_EEN_241	_	GG	_	_	CG	_	_	_	AA	_	CG	AT	_	_
6._LCT_EEN_241	_	GG	_	_	CG	_	_	_	AA	_	CG	AT	_	_
7._LCT_EEN_241	_	GG	_	_	CG	_	_	_	AA	_	CG	AT	_	_
8._LCT_EEN_241	_	GG	_	_	CG	_	_	_	AA	_	CG	AT	_	_
9._LCT_EEN_241	_	GG	_	_	CG	_	_	_	AA	_	CG	AT	_	_
10._RUQ_185	_	GG	_	_	CG	_	_	_	AA	_	CG	AT	_	_
11._RUQ_185	_	_	_	GG	_	_	_	_	_	CC	CG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT	TT
1._GC-08-269-8-41	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT	TT
2._GC-08-269-8-41	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT	TT
3._GC-08-269-8-41	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT	TT
4._GC-08-269-8-41	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG	CC	GG	TT	TT
5._LCT_EEN_241	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_	TT
6._LCT_EEN_241	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_	TT
7._LCT_EEN_241	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_	TT
8._LCT_EEN_241	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_	TT
9._LCT_EEN_241	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_	TT
10._RUQ_185	_	GG	_	AA	GG	_	_	GG	_	_	_	_	_	TT
11._RUQ_185	AG	GG	CC	AA	GG	_	_	GG	CC	_	_	GG	TT	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AG	AG	AA	CC	AC	GG	GG	TT	TT	TT	CC	TT	GG	CC
1._GC-08-269-8-41	AG	AG	AA	CC	AC	GG	GG	TT	_	TT	CC	TT	GG	CC
2._GC-08-269-8-41	AG	AG	AA	CC	AC	GG	GG	TT	_	TT	CC	TT	GG	CC
3._GC-08-269-8-41	AG	AG	AA	CC	AC	GG	GG	TT	_	TT	CC	TT	GG	CC
4._GC-08-269-8-41	AG	AG	AA	CC	AC	GG	GG	TT	_	TT	CC	TT	GG	CC
5._LCT_EEN_241	_	_	_	_	_	_	_	_	_	TT	CC	_	_	_
6._LCT_EEN_241	_	_	_	_	_	_	_	_	_	TT	CC	_	_	_
7._LCT_EEN_241	_	_	_	_	_	_	_	_	_	TT	CC	_	_	_
8._LCT_EEN_241	_	_	_	_	_	_	_	_	_	TT	CC	_	_	_
9._LCT_EEN_241	_	_	_	_	_	_	_	_	_	TT	CC	_	_	_
10._RUQ_185	_	_	_	_	_	_	_	_	_	TT	CC	_	_	_
11._RUQ_185	_	AG	_	_	_	_	_	_	CC	TT	_	TT	-	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	CC	AG	AA	AG	GG	GG	AA	CT	CC	AG	CC	GG	AC
1._GC-08-269-8-41	TT	CC	AG	AA	AG	GG	GG	AA	CT	CC	_	CC	GG	AC
2._GC-08-269-8-41	TT	CC	AG	AA	AG	GG	GG	AA	CT	CC	_	CC	GG	AC
3._GC-08-269-8-41	TT	CC	AG	AA	AG	GG	GG	AA	CT	CC	_	CC	GG	AC
4._GC-08-269-8-41	TT	CC	AG	AA	AG	GG	GG	AA	CT	CC	_	CC	GG	AC
5._LCT_EEN_241	TT	CC	_	AA	AG	GG	GG	_	_	_	AG	_	_	_
6._LCT_EEN_241	TT	CC	_	AA	AG	GG	GG	_	_	_	_	_	_	_
7._LCT_EEN_241	TT	CC	_	AA	AG	GG	GG	_	_	_	_	_	_	_
8._LCT_EEN_241	TT	CC	_	AA	AG	GG	GG	_	_	_	_	_	_	_
9._LCT_EEN_241	TT	CC	_	AA	AG	GG	GG	_	_	_	_	_	_	_
10._RUQ_185	TT	CC	_	AA	AG	GG	GG	_	_	_	AG	_	_	_
11._RUQ_185	TT	CC	AG	AA	AG	GG	GG	AA	_	_	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AC	GG	AC	CC	CC	CC	TT	CT	CC	TT	GG	CC	CC	GG
1._GC-08-269-8-41	AC	GG	AC	CC	CC	CC	TT	CT	CC	TT	GG	CC	CC	GG
2._GC-08-269-8-41	AC	GG	AC	CC	CC	CC	TT	CT	CC	TT	GG	CC	CC	GG
3._GC-08-269-8-41	AC	GG	AC	CC	CC	CC	TT	CT	CC	TT	GG	CC	CC	GG
4._GC-08-269-8-41	AC	GG	AC	CC	CC	CC	TT	CT	CC	TT	GG	CC	CC	_
5._LCT_EEN_241	_	_	AC	CC	_	_	TT	CT	CC	_	GG	_	CC	GG
6._LCT_EEN_241	_	_	AC	CC	_	_	TT	CT	CC	_	GG	_	CC	GG
7._LCT_EEN_241	_	_	AC	CC	_	_	TT	CT	CC	_	GG	_	CC	GG
8._LCT_EEN_241	_	_	AC	CC	_	_	TT	CT	CC	_	GG	_	CC	GG
9._LCT_EEN_241	_	_	AC	CC	_	_	TT	CT	CC	_	GG	_	CC	_
10._RUQ_185	_	_	AC	CC	_	_	CT	CT	CC	_	GG	_	CC	GG
11._RUQ_185	_	_	AC	CC	_	CC	TT	_	_	_	GG	CC	CC	GG

	85	86	87
_Input profile	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-269-8-41	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-269-8-41	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-269-8-41	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-269-8-41	TT	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._LCT_EEN_241	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._LCT_EEN_241	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_241	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_241	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._LCT_EEN_241	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_185	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_185	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_241 GC-08-269-8-41

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

1._LCT_EEN_241 GC-08-269-8-41

identical
85 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

2._LCT_EEN_241 GC-08-269-8-41

identical
85 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._LCT_EEN_241 GC-08-269-8-41

identical
85 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._LCT_EEN_241 GC-08-269-8-41

identical
84 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._LCT_EEN_241

identical
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

6._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

7._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

8._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._LCT_EEN_241

identical
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

10._LCT_EEN_241 RUQ_185

95.7 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._LCT_EEN_241 RUQ_185

94.7 %
38 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1350	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP316	14	TcSNP521	15	TcSNP860
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP32	24	TcSNP448	25	TcSNP872
26	TcSNP953	27	TcSNP1034	28	TcSNP1175	29	TcSNP1111	30	TcSNP577
31	TcSNP90	32	TcSNP998	33	TcSNP150	34	TcSNP28	35	TcSNP751
36	TcSNP1484	37	TcSNP602	38	TcSNP561	39	TcSNP894	40	TcSNP1063
41	TcSNP1126	42	TcSNP1270	43	TcSNP606	44	TcSNP329	45	TcSNP689
46	TcSNP944	47	TcSNP1242	48	TcSNP1383	49	TcSNP547	50	TcSNP776
51	TcSNP1309	52	TcSNP151	53	TcSNP1520	54	TcSNP799	55	TcSNP899
56	TcSNP1439	57	TcSNP1442	58	TcSNP193	59	TcSNP364	60	TcSNP144
61	TcSNP230	62	TcSNP560	63	TcSNP723	64	TcSNP731	65	TcSNP701
66	TcSNP1041	67	TcSNP645	68	Tcm003s01336581	69	Tcm003s07402719	70	Tcm001s00947643
71	Tcm006s26664133	72	Tcm002s20575712	73	TcSNP529	74	TcSNP1458	75	TcSNP60
76	TcSNP823	77	TcSNP619	78	TcSNP994	79	TcSNP1144	80	TcSNP1156
81	TcSNP469	82	TcSNP999	83	TcSNP242	84	TcSNP1253	85	TcSNP1414
86	TcSNP154	87	TcSNP240