SNP Profiles of LCTEEN-241 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
1._GC-08-269-8-41	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
2._GC-08-269-8-41	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
3._GC-08-269-8-41	AT	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	CC
4._GC-08-269-8-41	_	AA	CC	CC	AA	AG	TT	CC	CC	TT	AA	CT	TT	_
5._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
6._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
7._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
8._LCT_EEN_241	AT	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
9._LCT_EEN_241	_	AA	CC	CC	_	_	_	_	CC	TT	AA	_	TT	_
10._RUQ_185	_	_	CC	CC	_	_	CT	_	CC	_	_	-	TT	_
11._RUQ_185	AT	AA	CC	CC	_	_	_	_	CC	CT	AA	_	CT	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	AA	TT	CG
1._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	AA	TT	CG
2._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	_	AA	TT	CG
3._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	AA	AA	TT	CG
4._GC-08-269-8-41	TT	CC	AA	GG	CC	GG	CG	CC	AA	CC	_	AA	_	CG
5._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	_	AA	TT	_
6._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	_	AA	TT	_
7._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	_	AA	TT	_
8._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	_	AA	TT	_
9._LCT_EEN_241	_	_	_	GG	_	_	CG	_	_	_	_	AA	_	_
10._RUQ_185	_	_	_	_	_	GG	_	_	_	_	AA	_	TT	CC
11._RUQ_185	_	_	_	GG	_	_	CG	_	_	_	_	AA	TT	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG
1._GC-08-269-8-41	CG	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG
2._GC-08-269-8-41	CG	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG
3._GC-08-269-8-41	CG	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG
4._GC-08-269-8-41	CG	AT	TT	TT	AG	GG	CC	AA	GG	GG	TT	GG	CC	GG
5._LCT_EEN_241	CG	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_
6._LCT_EEN_241	CG	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_
7._LCT_EEN_241	CG	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_
8._LCT_EEN_241	CG	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_
9._LCT_EEN_241	CG	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_
10._RUQ_185	CG	_	_	_	AG	GG	CC	AA	GG	_	_	GG	CC	_
11._RUQ_185	CG	AT	_	_	_	GG	_	AA	GG	_	_	GG	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC
1._GC-08-269-8-41	CC	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC
2._GC-08-269-8-41	CC	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC
3._GC-08-269-8-41	CC	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC
4._GC-08-269-8-41	CC	GG	TT	TT	AG	AG	AA	CC	AC	GG	GG	TT	TT	CC
5._LCT_EEN_241	_	_	_	TT	_	_	_	_	_	_	_	_	TT	CC
6._LCT_EEN_241	_	_	_	TT	_	_	_	_	_	_	_	_	TT	CC
7._LCT_EEN_241	_	_	_	TT	_	_	_	_	_	_	_	_	TT	CC
8._LCT_EEN_241	_	_	_	TT	_	_	_	_	_	_	_	_	TT	CC
9._LCT_EEN_241	_	_	_	TT	_	_	_	_	_	_	_	_	TT	CC
10._RUQ_185	_	GG	TT	_	_	AG	_	_	_	_	_	_	TT	_
11._RUQ_185	_	_	_	TT	_	_	_	_	_	_	_	_	TT	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT
1._GC-08-269-8-41	TT	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT
2._GC-08-269-8-41	TT	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT
3._GC-08-269-8-41	TT	GG	GG	CC	TT	CC	CC	AG	AA	AG	GG	GG	AA	CT
4._GC-08-269-8-41	TT	GG	_	CC	TT	CC	_	AG	AA	AG	GG	GG	AA	CT
5._LCT_EEN_241	_	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_
6._LCT_EEN_241	_	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_
7._LCT_EEN_241	_	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_
8._LCT_EEN_241	_	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_
9._LCT_EEN_241	_	_	_	_	TT	CC	_	_	AA	AG	GG	GG	_	_
10._RUQ_185	TT	-	GG	CC	TT	CC	_	AG	AA	AG	GG	GG	AA	_
11._RUQ_185	_	_	GG	_	TT	CC	CC	_	AA	AG	GG	GG	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT
1._GC-08-269-8-41	CC	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT
2._GC-08-269-8-41	CC	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT
3._GC-08-269-8-41	CC	TT	CC	GG	AC	AC	GG	AC	CC	CC	AA	CC	TT	CT
4._GC-08-269-8-41	CC	_	CC	GG	AC	AC	GG	AC	CC	CC	_	CC	TT	CT
5._LCT_EEN_241	_	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT
6._LCT_EEN_241	_	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT
7._LCT_EEN_241	_	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT
8._LCT_EEN_241	_	TT	_	_	_	_	_	AC	CC	_	_	_	TT	CT
9._LCT_EEN_241	_	_	_	_	_	_	_	AC	CC	_	_	_	TT	CT
10._RUQ_185	_	_	_	_	_	_	_	AC	CC	_	_	CC	TT	_
11._RUQ_185	_	TT	_	_	_	_	_	AC	CC	_	_	_	CT	CT

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-08-269-8-41	CC	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
2._GC-08-269-8-41	CC	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
3._GC-08-269-8-41	CC	TT	GG	CC	CC	_	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
4._GC-08-269-8-41	CC	TT	GG	CC	CC	GG	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
5._LCT_EEN_241	CC	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X
6._LCT_EEN_241	CC	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X
7._LCT_EEN_241	CC	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X
8._LCT_EEN_241	CC	_	GG	_	CC	_	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._LCT_EEN_241	CC	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._RUQ_185	_	_	GG	CC	CC	GG	_	_	_	X_X	X_X	X_X	X_X	X_X
11._RUQ_185	CC	_	GG	_	CC	GG	TT	_	_	X_X	X_X	X_X	X_X	X_X

Input profile: LCT_EEN_241 GC-08-269-8-41

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

1._LCT_EEN_241 GC-08-269-8-41

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._LCT_EEN_241 GC-08-269-8-41

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

3._LCT_EEN_241 GC-08-269-8-41

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._LCT_EEN_241 GC-08-269-8-41

identical
85 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._LCT_EEN_241

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 6

Dapeng Zhang, 2016

6._LCT_EEN_241

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 4

Dapeng Zhang, 2016

7._LCT_EEN_241

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._LCT_EEN_241

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 3

Dapeng Zhang, 2016

9._LCT_EEN_241

identical
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8841 2

Dapeng Zhang, 2016

10._LCT_EEN_241 RUQ_185

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._LCT_EEN_241 RUQ_185

96.2 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240