SNP Profiles of EET 397 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCCCTGGTTCTCT
1._EET_397_[ECU]___
ATCCCCCCAGAATTTTCCCTGGTTCTCT
2._EET_397_[ECU]___
ATCCCCCCAGAATTTTCCCTGGTTCTCT
3._EET_397_[ECU]___
ATCCCCCCAGAATTTTCCCTGGTTCTCT
4._EET_397_[ECU]___
ATCCCCCCAGAATTTTCCCTGGTTCTCT
5._EET_397_[ECU]___
ATCCCCCCAGAATTTTCCCTGGTTCTCT
6._EET_397_[ECU]___
ATCCCCCCAGAATTTTCCCTGGTTCTCT
7._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
8._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
9._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
10._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
11._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
12._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
13._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
14._EET_397_[ECU]___
ATCCCCCC________CCCTGG__CT__
15._EET_397_[ECU]___
ATCCCCCC________CCCTAG__CT__
16._EET_397_[ECU]___
______CC____TT______________
17._EET_397_[ECU]___
______CC____TT______________
18._EET_397_[ECU]___
____CC__________CC____TTCT__
19._EET_397_[ECU]___
ATCC__CCAGAA__AAGG__GGAAAGAG
20._EET_397_[ECU]___
ATCC__CCAGAA__AAGG__GGAAAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAGGCCGGCGCCAACCGGAAATCG
1._EET_397_[ECU]___
ATACAAGGCCGGCGCCAACCGGAAATCG
2._EET_397_[ECU]___
ATACAAGGCCGGCGCCAACCGGAAATCG
3._EET_397_[ECU]___
ATACAAGGCCGGCGCCAACCGGAAATCG
4._EET_397_[ECU]___
ATACAAGGCCGGCGCCAACCGGAAATCG
5._EET_397_[ECU]___
ATACAAGGCCGGCGCCAACCGGAAATCG
6._EET_397_[ECU]___
ATACAAGGCCGGCGCCAACCGGAAATCG
7._EET_397_[ECU]___
______GG____CG________AAAT__
8._EET_397_[ECU]___
______GG____CG________AAAT__
9._EET_397_[ECU]___
______GG____CG________AAAT__
10._EET_397_[ECU]___
______GG____CG________AAAT__
11._EET_397_[ECU]___
______GG____CG________AAAT__
12._EET_397_[ECU]___
______GG____CG________AAAT__
13._EET_397_[ECU]___
______GG____CG________AAAT__
14._EET_397_[ECU]___
______GG____CG________AAAT__
15._EET_397_[ECU]___
______GG____CG________AAAT__
16._EET_397_[ECU]___
______GGCT__________________
17._EET_397_[ECU]___
______GGCT__________________
18._EET_397_[ECU]___
__________GG________GG__TTCC
19._EET_397_[ECU]___
ATACAGGGGG__CGGGAAGGGGAAATCG
20._EET_397_[ECU]___
ATACAGGGGG__CGGGAAGGGGAAATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGATTTTTGGCGACAAGGGTTTGGCTGG
1._EET_397_[ECU]___
CGATTTTTGGCGACAAGGGTTTGGCTGG
2._EET_397_[ECU]___
CGATTTTTGGCGACAAGGGTTTGGCTGG
3._EET_397_[ECU]___
CGATTTTTGGCGACAAGGGTTTGGCTGG
4._EET_397_[ECU]___
CGATTTTTGGCGACAAGGGTTTGGCTGG
5._EET_397_[ECU]___
CGATTTTTGGCGACAAGGGTTTGGCTGG
6._EET_397_[ECU]___
CGATTTTTGGCGACAAGGGT__GGCTGG
7._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
8._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
9._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
10._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
11._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
12._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
13._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
14._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
15._EET_397_[ECU]___
CGAT______CG__AAGG____GG____
16._EET_397_[ECU]___
CG________CG__AA________CT__
17._EET_397_[ECU]___
CG________CG__AA________CT__
18._EET_397_[ECU]___
CG______GGCG__AAGG____GGCT__
19._EET_397_[ECU]___
CGATAAAAGGCGACAACCACAAGGAGGG
20._EET_397_[ECU]___
CGATAAAAGGCGACAACCACAAGGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGTATCTAGGGAGCTCCAGAAGTTTTT
1._EET_397_[ECU]___
CGGTATCTAGGGAGCTCCAGAAGTTTTT
2._EET_397_[ECU]___
CGGTATCTAGGGAGCTCCAGAAGTTTTT
3._EET_397_[ECU]___
CGGTATCTAGGG__CTCCAGAAGTTTTT
4._EET_397_[ECU]___
CGGTATCTAGGG__CTCCAGAAGTTTTT
5._EET_397_[ECU]___
CGGTATCTAGGG__CTCCAGAAGTTTTT
6._EET_397_[ECU]___
CGGTATCTAGGGAGCTCCAGAAGTTTTT
7._EET_397_[ECU]___
______CT__________________TT
8._EET_397_[ECU]___
______CT__________________TT
9._EET_397_[ECU]___
______CT__________________TT
10._EET_397_[ECU]___
______CT__________________TT
11._EET_397_[ECU]___
______CT__________________TT
12._EET_397_[ECU]___
______CT__________________TT
13._EET_397_[ECU]___
______CT__________________TT
14._EET_397_[ECU]___
______CT__________________TT
15._EET_397_[ECU]___
______CT__________________TT
16._EET_397_[ECU]___
__________GG________________
17._EET_397_[ECU]___
__________GG________________
18._EET_397_[ECU]___
____AT____GG____________CT__
19._EET_397_[ECU]___
CGAC__AG__GGAAAG__AGAAACAGAA
20._EET_397_[ECU]___
CGAC__AG__GGAAAG__AGAAACAGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTAGCCCCTTCCCGGGACAAGGGGAA
1._EET_397_[ECU]___
CCTTAGCCCCTTCCCGGGACAAGGGGAA
2._EET_397_[ECU]___
CCTTAGCCCCTTCCCGGGACAAGGGGAA
3._EET_397_[ECU]___
CCTTAGCCCCTTCCCGGGACAAGGGGAA
4._EET_397_[ECU]___
CCTTAGCCCCTTCCCGGGACAAGGGGAA
5._EET_397_[ECU]___
CCTTAGCCCCTTCCCGGGACAAGGGGAA
6._EET_397_[ECU]___
CCTTAGCCCCTTCCCGGGAC__GGGGAA
7._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
8._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
9._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
10._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
11._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
12._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
13._EET_397_[ECU]___
CC____CC__TTCCCG__AC__GGGG__
14._EET_397_[ECU]___
CC____CC__TTCCCG__ACAAGGGG__
15._EET_397_[ECU]___
CC________TTCCCG__ACAAGGGG__
16._EET_397_[ECU]___
____AG____________ACAA__GGAA
17._EET_397_[ECU]___
____AG____________ACAA__GGAA
18._EET_397_[ECU]___
__TT__CCCCTTCC____CCAAGGGGAA
19._EET_397_[ECU]___
GGAAAGGGGGAACCCGGGACAACCCCAA
20._EET_397_[ECU]___
GGAAAGGGGGAACCCGGGACAACCCCAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCCAACTCCGGACCCAGAACCCCAACC
1._EET_397_[ECU]___
TTCCAACTCCGGACCCAGAACCCCAACC
2._EET_397_[ECU]___
TTCCAACTCCGGACCCAGAACCCCAACC
3._EET_397_[ECU]___
TTCCAACTCCGGACCCAGAACCCCAACC
4._EET_397_[ECU]___
TTCCAACTCCGGACCCAGAACCCCAACC
5._EET_397_[ECU]___
TTCCAACTCCGGACCCAGAACCCCAACC
6._EET_397_[ECU]___
TTCCAACTCCGGACCCAGAACCCCAACC
7._EET_397_[ECU]___
____AACT__________AACC______
8._EET_397_[ECU]___
____AACT__________AACC______
9._EET_397_[ECU]___
____AACT__________AACC______
10._EET_397_[ECU]___
____AACT__________AACC______
11._EET_397_[ECU]___
____AACT__________AACC______
12._EET_397_[ECU]___
____AACT__________AACC______
13._EET_397_[ECU]___
____AACT__________AACC______
14._EET_397_[ECU]___
____AGCT__________AACC______
15._EET_397_[ECU]___
____AGCT__________AACC______
16._EET_397_[ECU]___
____AG____________AACC____CC
17._EET_397_[ECU]___
____AG____________AACC____CC
18._EET_397_[ECU]___
__________________AACC____CC
19._EET_397_[ECU]___
______AGCCGGACCC__AAGGGGAACC
20._EET_397_[ECU]___
______AGCCGGACCC__AAGGGGAACC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
1._EET_397_[ECU]___
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
2._EET_397_[ECU]___
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
3._EET_397_[ECU]___
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
4._EET_397_[ECU]___
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
5._EET_397_[ECU]___
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
6._EET_397_[ECU]___
TTCTCCCTAGCCCTGGCCATGGX_XX_XX_X
7._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
8._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
9._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
10._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
11._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
12._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
13._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
14._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
15._EET_397_[ECU]___
TTCTCC__AG__CTGGCC____X_XX_XX_X
16._EET_397_[ECU]___
____CC____CC__GG______X_XX_XX_X
17._EET_397_[ECU]___
____CC____CC__GG______X_XX_XX_X
18._EET_397_[ECU]___
TT______AGCCCTGG______X_XX_XX_X
19._EET_397_[ECU]___
AAAG__AG____AGCCGGATGGX_XX_XX_X
20._EET_397_[ECU]___
AAAG__AG____AGCCGGATGGX_XX_XX_X

Input profile: EET_397_[ECU] GC-08-274-8-46

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._EET_397_[ECU] GC-08-274-8-46

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._EET_397_[ECU] GC-08-274-8-46

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_397_[ECU] GC-08-274-8-46

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._EET_397_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 9
 Dapeng Zhang, 2016

8._EET_397_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 7
 Dapeng Zhang, 2016

9._EET_397_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 6
 Dapeng Zhang, 2016

10._EET_397_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 5
 Dapeng Zhang, 2016

11._EET_397_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 4
 Dapeng Zhang, 2016

12._EET_397_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 1
 Dapeng Zhang, 2016

13._EET_397_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8846 2
 Dapeng Zhang, 2016

14._EET_397_[ECU] RUQ_759

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_397_[ECU]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F456 T11
 Dapeng Zhang, 2016

16._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._EET_397_[ECU] RUQ_759

94.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._EET_397_[ECU] RUQ_759

54.3 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

54.3 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 117, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240