SNP Profiles of EET 397 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
1._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
2._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
3._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
4._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
5._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
6._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
7._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
8._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
9._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
10._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
11._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
12._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
13._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
14._RUQ_759	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
15._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	AG	__	CT	__
16._RUQ_759	__	__	__	CC	__	__	TT	__	__	__	__	__	__	__
17._RUQ_759	__	__	__	CC	__	__	TT	__	__	__	__	__	__	__
18._RUQ_759	__	__	CC	__	__	__	__	__	CC	__	__	TT	CT	__
19._RUQ_759	AT	CC	__	CC	AG	AA	__	AA	GG	__	GG	AA	AG	AG
20._EET_397_[ECU]_Fld#_117_Plt#_2	AT	CC	__	CC	AG	AA	__	AA	GG	__	GG	AA	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
1._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
2._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
3._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
4._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
5._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
6._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
7._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
8._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
9._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
10._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
11._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
12._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
13._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
14._RUQ_759	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
15._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
16._RUQ_759	__	__	__	GG	CT	__	__	__	__	__	__	__	__	__
17._RUQ_759	__	__	__	GG	CT	__	__	__	__	__	__	__	__	__
18._RUQ_759	__	__	__	__	__	GG	__	__	__	__	GG	__	TT	CC
19._RUQ_759	AT	AC	AG	GG	GG	__	CG	GG	AA	GG	GG	AA	AT	CG
20._EET_397_[ECU]_Fld#_117_Plt#_2	AT	AC	AG	GG	GG	__	CG	GG	AA	GG	GG	AA	AT	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
1._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
2._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
3._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
4._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
5._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
6._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	__	GG	CT	GG
7._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
8._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
9._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
10._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
11._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
12._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
13._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
14._RUQ_759	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
15._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
16._RUQ_759	CG	__	__	__	__	CG	__	AA	__	__	__	__	CT	__
17._RUQ_759	CG	__	__	__	__	CG	__	AA	__	__	__	__	CT	__
18._RUQ_759	CG	__	__	__	GG	CG	__	AA	GG	__	__	GG	CT	__
19._RUQ_759	CG	AT	AA	AA	GG	CG	AC	AA	CC	AC	AA	GG	AG	GG
20._EET_397_[ECU]_Fld#_117_Plt#_2	CG	AT	AA	AA	GG	CG	AC	AA	CC	AC	AA	GG	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CG	GT	AT	CT	AG	GG	AG	CT	CC	AG	AA	GT	TT	TT
1._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	AG	CT	CC	AG	AA	GT	TT	TT
2._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	AG	CT	CC	AG	AA	GT	TT	TT
3._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	__	CT	CC	AG	AA	GT	TT	TT
4._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	__	CT	CC	AG	AA	GT	TT	TT
5._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	__	CT	CC	AG	AA	GT	TT	TT
6._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	AG	CT	CC	AG	AA	GT	TT	TT
7._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
8._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
9._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
10._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
11._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
12._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
13._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
14._RUQ_759	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
15._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	__	TT
16._RUQ_759	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
17._RUQ_759	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
18._RUQ_759	__	__	AT	__	__	GG	__	__	__	__	__	__	CT	__
19._RUQ_759	CG	AC	__	AG	__	GG	AA	AG	__	AG	AA	AC	AG	AA
20._EET_397_[ECU]_Fld#_117_Plt#_2	CG	AC	__	AG	__	GG	AA	AG	__	AG	AA	AC	AG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA
1._GC-08-274-8-46	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA
2._GC-08-274-8-46	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA
3._GC-08-274-8-46	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA
4._GC-08-274-8-46	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA
5._GC-08-274-8-46	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA
6._GC-08-274-8-46	CC	TT	AG	CC	CC	TT	CC	CG	GG	AC	__	GG	GG	AA
7._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
8._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
9._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
10._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
11._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
12._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
13._EET_397_[ECU]	CC	__	__	CC	__	TT	CC	CG	__	AC	__	GG	GG	__
14._RUQ_759	CC	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__
15._EET_397_[ECU]	CC	__	__	__	__	TT	CC	CG	__	AC	AA	GG	GG	__
16._RUQ_759	__	__	AG	__	__	__	__	__	__	AC	AA	__	GG	AA
17._RUQ_759	__	__	AG	__	__	__	__	__	__	AC	AA	__	GG	AA
18._RUQ_759	__	TT	__	CC	CC	TT	CC	__	__	CC	AA	GG	GG	AA
19._RUQ_759	GG	AA	AG	GG	GG	AA	CC	CG	GG	AC	AA	CC	CC	AA
20._EET_397_[ECU]_Fld#_117_Plt#_2	GG	AA	AG	GG	GG	AA	CC	CG	GG	AC	AA	CC	CC	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
1._GC-08-274-8-46	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
2._GC-08-274-8-46	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
3._GC-08-274-8-46	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
4._GC-08-274-8-46	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
5._GC-08-274-8-46	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
6._GC-08-274-8-46	TT	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC
7._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
8._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
9._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
10._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
11._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
12._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
13._EET_397_[ECU]	__	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__
14._RUQ_759	__	__	AG	CT	__	__	__	__	__	AA	CC	__	__	__
15._EET_397_[ECU]	__	__	AG	CT	__	__	__	__	__	AA	CC	__	__	__
16._RUQ_759	__	__	AG	__	__	__	__	__	__	AA	CC	__	__	CC
17._RUQ_759	__	__	AG	__	__	__	__	__	__	AA	CC	__	__	CC
18._RUQ_759	__	__	__	__	__	__	__	__	__	AA	CC	__	__	CC
19._RUQ_759	__	__	__	AG	CC	GG	AC	CC	__	AA	GG	GG	AA	CC
20._EET_397_[ECU]_Fld#_117_Plt#_2	__	__	__	AG	CC	GG	AC	CC	__	AA	GG	GG	AA	CC

	85	86	87	88	89	90	91	92	93	94	95
_Input profile	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
1._GC-08-274-8-46	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
2._GC-08-274-8-46	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
3._GC-08-274-8-46	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
4._GC-08-274-8-46	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
5._GC-08-274-8-46	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
6._GC-08-274-8-46	TT	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X
7._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
8._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
9._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
10._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
11._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
12._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
13._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
14._RUQ_759	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
15._EET_397_[ECU]	TT	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X
16._RUQ_759	__	__	CC	__	__	CC	__	GG	__	__	__	X_X	X_X	X_X
17._RUQ_759	__	__	CC	__	__	CC	__	GG	__	__	__	X_X	X_X	X_X
18._RUQ_759	TT	__	__	__	AG	CC	CT	GG	__	__	__	X_X	X_X	X_X
19._RUQ_759	AA	AG	__	AG	__	__	AG	CC	GG	AT	GG	X_X	X_X	X_X
20._EET_397_[ECU]_Fld#_117_Plt#_2	AA	AG	__	AG	__	__	AG	CC	GG	AT	GG	X_X	X_X	X_X

Input profile: EET_397_[ECU] GC-08-274-8-46

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

1._EET_397_[ECU] GC-08-274-8-46

identical
95 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

2._EET_397_[ECU] GC-08-274-8-46

identical
95 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

3._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._EET_397_[ECU] GC-08-274-8-46

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 9

Dapeng Zhang, 2016

8._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 7

Dapeng Zhang, 2016

9._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 6

Dapeng Zhang, 2016

10._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 5

Dapeng Zhang, 2016

11._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 4

Dapeng Zhang, 2016

12._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 1

Dapeng Zhang, 2016

13._EET_397_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 2

Dapeng Zhang, 2016

14._EET_397_[ECU] RUQ_759

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._EET_397_[ECU]

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F456 T11

Dapeng Zhang, 2016

16._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

17._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

18._EET_397_[ECU] RUQ_759

94.4 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._EET_397_[ECU] RUQ_759

54.3 %
81 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

54.3 %
81 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 117, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP776	55	TcSNP1309
56	TcSNP151	57	TcSNP1520	58	TcSNP799	59	TcSNP899	60	TcSNP226
61	TcSNP1439	62	TcSNP1442	63	TcSNP193	64	TcSNP25	65	TcSNP364
66	TcSNP144	67	TcSNP230	68	TcSNP560	69	TcSNP723	70	TcSNP731
71	TcSNP701	72	TcSNP1041	73	TcSNP645	74	TcSNP917	75	Tcm003s01336581
76	Tcm003s07402719	77	Tcm001s00947643	78	Tcm006s26664133	79	Tcm002s20575712	80	TcSNP529
81	TcSNP1458	82	TcSNP60	83	TcSNP430	84	TcSNP823	85	TcSNP619
86	TcSNP994	87	TcSNP1144	88	TcSNP1156	89	TcSNP469	90	TcSNP999
91	TcSNP242	92	TcSNP1253	93	TcSNP1414	94	TcSNP154	95	TcSNP240