SNP Profiles of EET 397 [ECU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
1._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
2._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
3._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
4._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
5._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
6._GC-08-274-8-46	AT	CC	CC	CC	AG	AA	TT	TT	CC	CT	GG	TT	CT	CT
7._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
8._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
9._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
10._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
11._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
12._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
13._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
14._RUQ_759	AT	CC	CC	CC	__	__	__	__	CC	CT	GG	__	CT	__
15._EET_397_[ECU]	AT	CC	CC	CC	__	__	__	__	CC	CT	AG	__	CT	__
16._RUQ_759	__	__	__	CC	__	__	TT	__	__	__	__	__	__	__
17._RUQ_759	__	__	__	CC	__	__	TT	__	__	__	__	__	__	__
18._RUQ_759	__	__	CC	__	__	__	__	__	CC	__	__	TT	CT	__
19._RUQ_759	AT	CC	__	CC	AG	AA	__	AA	GG	__	GG	AA	AG	AG
20._EET_397_[ECU]_Fld#_117_Plt#_2	AT	CC	__	CC	AG	AA	__	AA	GG	__	GG	AA	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
1._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
2._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
3._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
4._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
5._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
6._GC-08-274-8-46	AT	AC	AA	GG	CC	GG	CG	CC	AA	CC	GG	AA	AT	CG
7._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
8._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
9._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
10._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
11._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
12._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
13._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
14._RUQ_759	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
15._EET_397_[ECU]	__	__	__	GG	__	__	CG	__	__	__	__	AA	AT	__
16._RUQ_759	__	__	__	GG	CT	__	__	__	__	__	__	__	__	__
17._RUQ_759	__	__	__	GG	CT	__	__	__	__	__	__	__	__	__
18._RUQ_759	__	__	__	__	__	GG	__	__	__	__	GG	__	TT	CC
19._RUQ_759	AT	AC	AG	GG	GG	__	CG	GG	AA	GG	GG	AA	AT	CG
20._EET_397_[ECU]_Fld#_117_Plt#_2	AT	AC	AG	GG	GG	__	CG	GG	AA	GG	GG	AA	AT	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
1._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
2._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
3._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
4._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
5._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	TT	GG	CT	GG
6._GC-08-274-8-46	CG	AT	TT	TT	GG	CG	AC	AA	GG	GT	__	GG	CT	GG
7._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
8._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
9._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
10._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
11._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
12._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
13._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
14._RUQ_759	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
15._EET_397_[ECU]	CG	AT	__	__	__	CG	__	AA	GG	__	__	GG	__	__
16._RUQ_759	CG	__	__	__	__	CG	__	AA	__	__	__	__	CT	__
17._RUQ_759	CG	__	__	__	__	CG	__	AA	__	__	__	__	CT	__
18._RUQ_759	CG	__	__	__	GG	CG	__	AA	GG	__	__	GG	CT	__
19._RUQ_759	CG	AT	AA	AA	GG	CG	AC	AA	CC	AC	AA	GG	AG	GG
20._EET_397_[ECU]_Fld#_117_Plt#_2	CG	AT	AA	AA	GG	CG	AC	AA	CC	AC	AA	GG	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
1._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
2._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
3._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
4._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
5._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
6._GC-08-274-8-46	CG	GT	AT	CT	AG	GG	CT	CC	AG	AA	GT	TT	TT	CC
7._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
8._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
9._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
10._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
11._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
12._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
13._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
14._RUQ_759	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
15._EET_397_[ECU]	__	__	__	CT	__	__	__	__	__	__	__	__	TT	CC
16._RUQ_759	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
17._RUQ_759	__	__	__	__	__	GG	__	__	__	__	__	__	__	__
18._RUQ_759	__	__	AT	__	__	GG	__	__	__	__	__	CT	__	__
19._RUQ_759	CG	AC	__	AG	__	GG	AG	__	AG	AA	AC	AG	AA	GG
20._EET_397_[ECU]_Fld#_117_Plt#_2	CG	AC	__	AG	__	GG	AG	__	AG	AA	AC	AG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA	TT
1._GC-08-274-8-46	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA	TT
2._GC-08-274-8-46	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA	TT
3._GC-08-274-8-46	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA	TT
4._GC-08-274-8-46	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA	TT
5._GC-08-274-8-46	TT	AG	CC	CC	TT	CC	CG	GG	AC	AA	GG	GG	AA	TT
6._GC-08-274-8-46	TT	AG	CC	CC	TT	CC	CG	GG	AC	__	GG	GG	AA	TT
7._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
8._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
9._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
10._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
11._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
12._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
13._EET_397_[ECU]	__	__	CC	__	TT	CC	CG	__	AC	__	GG	GG	__	__
14._RUQ_759	__	__	CC	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
15._EET_397_[ECU]	__	__	__	__	TT	CC	CG	__	AC	AA	GG	GG	__	__
16._RUQ_759	__	AG	__	__	__	__	__	__	AC	AA	__	GG	AA	__
17._RUQ_759	__	AG	__	__	__	__	__	__	AC	AA	__	GG	AA	__
18._RUQ_759	TT	__	CC	CC	TT	CC	__	__	CC	AA	GG	GG	AA	__
19._RUQ_759	AA	AG	GG	GG	AA	CC	CG	GG	AC	AA	CC	CC	AA	__
20._EET_397_[ECU]_Fld#_117_Plt#_2	AA	AG	GG	GG	AA	CC	CG	GG	AC	AA	CC	CC	AA	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
1._GC-08-274-8-46	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
2._GC-08-274-8-46	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
3._GC-08-274-8-46	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
4._GC-08-274-8-46	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
5._GC-08-274-8-46	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
6._GC-08-274-8-46	CC	AA	CT	CC	GG	AC	CC	AG	AA	CC	CC	AA	CC	TT
7._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
8._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
9._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
10._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
11._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
12._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
13._EET_397_[ECU]	__	AA	CT	__	__	__	__	__	AA	CC	__	__	__	TT
14._RUQ_759	__	AG	CT	__	__	__	__	__	AA	CC	__	__	__	TT
15._EET_397_[ECU]	__	AG	CT	__	__	__	__	__	AA	CC	__	__	__	TT
16._RUQ_759	__	AG	__	__	__	__	__	__	AA	CC	__	__	CC	__
17._RUQ_759	__	AG	__	__	__	__	__	__	AA	CC	__	__	CC	__
18._RUQ_759	__	__	__	__	__	__	__	__	AA	CC	__	__	CC	TT
19._RUQ_759	__	__	AG	CC	GG	AC	CC	__	AA	GG	GG	AA	CC	AA
20._EET_397_[ECU]_Fld#_117_Plt#_2	__	__	AG	CC	GG	AC	CC	__	AA	GG	GG	AA	CC	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
1._GC-08-274-8-46	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
2._GC-08-274-8-46	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
3._GC-08-274-8-46	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
4._GC-08-274-8-46	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
5._GC-08-274-8-46	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
6._GC-08-274-8-46	CT	CC	CT	AG	CC	CT	GG	CC	AT	GG	X_X	X_X	X_X	X_X
7._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
8._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
9._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
10._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
11._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
12._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
13._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
14._RUQ_759	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
15._EET_397_[ECU]	CT	CC	__	AG	__	CT	GG	CC	__	__	X_X	X_X	X_X	X_X
16._RUQ_759	__	CC	__	__	CC	__	GG	__	__	__	X_X	X_X	X_X	X_X
17._RUQ_759	__	CC	__	__	CC	__	GG	__	__	__	X_X	X_X	X_X	X_X
18._RUQ_759	__	__	__	AG	CC	CT	GG	__	__	__	X_X	X_X	X_X	X_X
19._RUQ_759	AG	__	AG	__	__	AG	CC	GG	AT	GG	X_X	X_X	X_X	X_X
20._EET_397_[ECU]_Fld#_117_Plt#_2	AG	__	AG	__	__	AG	CC	GG	AT	GG	X_X	X_X	X_X	X_X

Input profile: EET_397_[ECU] GC-08-274-8-46

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

1._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

2._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

3._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._EET_397_[ECU] GC-08-274-8-46

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._EET_397_[ECU] GC-08-274-8-46

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 9

Dapeng Zhang, 2016

8._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 7

Dapeng Zhang, 2016

9._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 6

Dapeng Zhang, 2016

10._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 5

Dapeng Zhang, 2016

11._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 4

Dapeng Zhang, 2016

12._EET_397_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 1

Dapeng Zhang, 2016

13._EET_397_[ECU]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8846 2

Dapeng Zhang, 2016

14._EET_397_[ECU] RUQ_759

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

15._EET_397_[ECU]

97.4 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F456 T11

Dapeng Zhang, 2016

16._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

17._EET_397_[ECU] RUQ_759

95.2 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.053 Nac
0.406 Sca
0.491

18._EET_397_[ECU] RUQ_759

94.4 %
36 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._EET_397_[ECU] RUQ_759

54.4 %
80 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

20._EET_397_[ECU] EET_397_[ECU]_Fld#_117_Plt#_2

54.4 %
80 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 117, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240