SNP Profiles of IMC 41 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
1._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
2._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
3._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
4._GC-08-275-8-47	AA	AC	CC	AC	GG	GG	CT	CC	CC	CC	GG	TT	CC	CT
5._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
6._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
7._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
8._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
9._IMC_41	AA	AC	CC	AC	__	__	__	__	CC	CC	GG	__	CC	__
10._IMC_41	AA	__	CC	__	__	__	__	__	CC	CC	GG	__	CC	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CG	GG	TT	AA	TT	GG	AA	AA	CC	GG
1._GC-08-275-8-47	AA	CC	AA	GG	CG	GG	TT	AA	TT	GG	AA	AA	CC	GG
2._GC-08-275-8-47	AA	CC	AA	GG	CG	GG	TT	AA	TT	GG	AA	AA	CC	GG
3._GC-08-275-8-47	AA	CC	AA	GG	CG	GG	TT	AA	TT	GG	AA	AA	CC	GG
4._GC-08-275-8-47	AA	CC	AA	GG	CG	GG	TT	AA	TT	GG	AA	AA	CC	GG
5._IMC_41	__	__	__	GG	__	GG	__	__	__	__	AA	AA	__	GG
6._IMC_41	__	__	__	GG	__	GG	__	__	__	__	AA	AA	__	GG
7._IMC_41	__	__	__	GG	__	GG	__	__	__	__	AA	AA	__	GG
8._IMC_41	__	__	__	GG	__	GG	__	__	__	__	AA	AA	__	GG
9._IMC_41	__	__	__	GG	__	GG	__	__	__	__	AA	AA	__	GG
10._IMC_41	__	__	__	GG	__	GG	__	__	__	__	AA	AA	__	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG	CC
1._GC-08-275-8-47	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG	CC
2._GC-08-275-8-47	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG	CC
3._GC-08-275-8-47	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG	CC
4._GC-08-275-8-47	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	TT	GG	CC
5._IMC_41	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__
6._IMC_41	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__
7._IMC_41	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__
8._IMC_41	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__
9._IMC_41	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__
10._IMC_41	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC	TT
1._GC-08-275-8-47	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC	TT
2._GC-08-275-8-47	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC	TT
3._GC-08-275-8-47	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC	TT
4._GC-08-275-8-47	GG	TT	CC	AA	GG	AA	CC	CC	GG	AA	GG	CC	CC	TT
5._IMC_41	__	__	CC	__	__	__	__	__	__	__	__	CC	CC	__
6._IMC_41	__	__	CC	__	__	__	__	__	__	__	__	CC	CC	__
7._IMC_41	__	__	CC	__	__	__	__	__	__	__	__	CC	CC	__
8._IMC_41	__	__	CC	__	__	__	__	__	__	__	__	CC	CC	__
9._IMC_41	__	__	CC	__	__	__	__	__	__	__	__	CC	CC	__
10._IMC_41	__	__	CC	__	__	__	__	__	__	__	__	CC	CC	__

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CC	CC	CC	GG	GG	AC	AA	GT	GG	AG	CC	CC	AA
1._GC-08-275-8-47	AG	CC	CC	CC	GG	GG	AC	AA	GT	GG	AG	CC	CC	AA
2._GC-08-275-8-47	AG	CC	CC	CC	GG	GG	AC	AA	GT	GG	AG	CC	CC	AA
3._GC-08-275-8-47	AG	CC	CC	CC	GG	GG	AC	AA	GT	GG	AG	CC	CC	AA
4._GC-08-275-8-47	AG	CC	CC	CC	GG	GG	AC	AA	GT	GG	AG	CC	CC	AA
5._IMC_41	__	CC	__	CC	GG	__	AC	AA	GT	GG	__	__	__	AA
6._IMC_41	__	CC	__	CC	GG	__	AC	AA	GT	GG	__	__	__	AA
7._IMC_41	__	CC	__	CC	GG	__	AC	AA	GT	GG	__	__	__	AA
8._IMC_41	__	CC	__	CC	GG	__	AC	AA	GT	GG	__	__	__	AA
9._IMC_41	__	CC	__	CC	GG	__	AC	AA	GT	GG	__	__	__	AA
10._IMC_41	__	__	__	CC	GG	__	AC	AA	GT	GG	__	__	__	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CT	AC	AA	CC	AC	AA	CG	CC	TT	AA	TT	CT	CC	CC
1._GC-08-275-8-47	CT	AC	AA	CC	AC	AA	CG	CC	TT	AA	TT	CT	CC	CC
2._GC-08-275-8-47	CT	AC	AA	CC	AC	AA	CG	CC	TT	AA	TT	CT	CC	CC
3._GC-08-275-8-47	CT	AC	AA	CC	AC	AA	CG	CC	TT	AA	TT	CT	CC	CC
4._GC-08-275-8-47	CT	AC	AA	CC	AC	AA	CG	CC	TT	AA	TT	CT	CC	CC
5._IMC_41	CT	__	__	__	__	AA	CG	__	__	__	TT	CT	CC	__
6._IMC_41	CT	__	__	__	__	AA	CG	__	__	__	TT	CT	CC	__
7._IMC_41	CT	__	__	__	__	AA	CG	__	__	__	TT	CT	CC	__
8._IMC_41	CT	__	__	__	__	AA	CG	__	__	__	TT	CT	CC	__
9._IMC_41	CT	__	__	__	__	AA	CG	__	__	__	TT	CT	CC	__
10._IMC_41	CT	__	__	__	__	AA	CG	__	__	__	TT	CT	CC	__

	85	86	87	88	89	90	91
_Input profile	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-275-8-47	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-275-8-47	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-275-8-47	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-08-275-8-47	AA	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._IMC_41	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._IMC_41	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._IMC_41	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._IMC_41	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._IMC_41	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._IMC_41	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_41 GC-08-275-8-47

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

1._IMC_41 GC-08-275-8-47

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._IMC_41 GC-08-275-8-47

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

3._IMC_41 GC-08-275-8-47

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

4._IMC_41 GC-08-275-8-47

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 5

Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 4

Dapeng Zhang, 2016

7._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 3

Dapeng Zhang, 2016

8._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 2

Dapeng Zhang, 2016

9._IMC_41

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8847 1

Dapeng Zhang, 2016

10._IMC_41

identical
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F418 T1

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	TcSNP529	77	TcSNP1458	78	TcSNP60	79	TcSNP430	80	TcSNP823
81	TcSNP619	82	TcSNP994	83	TcSNP1144	84	TcSNP1156	85	TcSNP469
86	TcSNP999	87	TcSNP242	88	TcSNP1253	89	TcSNP1414	90	TcSNP154
91	TcSNP240