SNP Profiles of TSA-656   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCCACAGAGCTCTCTCTGGCTCTTT
1._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
2._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
3._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
4._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
5._TSA_656
AAACCCAC________CTCTGG__CT__
6._TSA_656
AAACCCAC________CTCTGG__CT__
7._TSA_656
AAACCCAC________CTCTGG__CT__
8._TSA_656
AAACCCAC________CTCTGG__CT__
9._TSA_656
AAACCCAC________CTCTGG__CT__
10._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
11._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
12._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
13._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
14._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
15._RUQ_1016
ATCCCCCC________CTCTAG__CT__
16._TSA_656
ATCCCCCC________CCCTAG__TT__
17._TSA_656
ATCCCCCC________CCCTAG__TT__
18._TSA_656
ATCCCCCC________CCCTAG__TT__
19._TSA_656
ATCCCCCC________CCCTAG__TT__
20._TSA_656
ATCCCCCC________CCCTAG__TT__
21._RUQ_1016
____CCCC____TT__CC____TTTT__
22._RUQ_1016
______CC____TT______________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAAGCGCGCGCCAACTGGATAACG
1._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
2._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
3._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
4._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
5._TSA_656
______AG____CG________ATAA__
6._TSA_656
______AG____CG________ATAA__
7._TSA_656
______AG____CG________ATAA__
8._TSA_656
______AG____CG________ATAA__
9._TSA_656
______AG____CG________ATAA__
10._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
11._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
12._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
13._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
14._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
15._RUQ_1016
______GG____CG________ATAA__
16._TSA_656
______GG____CG________ATAA__
17._TSA_656
______GG____CG________ATAA__
18._TSA_656
______GG____CG________ATAA__
19._TSA_656
______GG____CG________ATAA__
20._TSA_656
______GG____CG________ATAA__
21._RUQ_1016
__________CG________GG__AACC
22._RUQ_1016
______GGCT__________________
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGATTTGTGGCGACAAGGGTGTAACCAG
1._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
2._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
3._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
4._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
5._TSA_656
CGAT______CG__AAGG____AA____
6._TSA_656
CGAT______CG__AAGG____AA____
7._TSA_656
CGAT______CG__AAGG____AA____
8._TSA_656
CGAT______CG__AAGG____AA____
9._TSA_656
CGAT______CG__AAGG____AA____
10._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
11._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
12._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
13._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
14._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
15._RUQ_1016
CCAT______GG__AAGG____AG____
16._TSA_656
CCAT______GG__AAGG____AG____
17._TSA_656
CCAT______GG__AAGG____AG____
18._TSA_656
CCAT______GG__AAGG____AG____
19._TSA_656
CCAT______GG__AAGG____AG____
20._TSA_656
CCAT______GG__AAGG____AG____
21._RUQ_1016
CC______GGGGCCAAGG____AACC__
22._RUQ_1016
CC________GG__AA________CC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCTAAAGAACTACAGAGGTTTCT
1._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
2._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
3._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
4._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
5._TSA_656
______CT__________________CT
6._TSA_656
______CT__________________CT
7._TSA_656
______CT__________________CT
8._TSA_656
______CT__________________CT
9._TSA_656
______CT__________________CT
10._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
11._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
12._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
13._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
14._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
15._RUQ_1016
______CT__________________TT
16._TSA_656
______TT__________________CT
17._TSA_656
______TT__________________CT
18._TSA_656
______TT__________________CT
19._TSA_656
______TT__________________CT
20._TSA_656
______TT__________________CT
21._RUQ_1016
__GGTT____AA____________CTTT
22._RUQ_1016
__________AA________________
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTTTGGCCCTCCACCGGGACAAGTGGAA
1._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
2._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
3._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
4._GC-08-257-8-25
CTTT__CCCTCCACCGGGACAAGTGGAA
5._TSA_656
CT____CC__CCACCG__ACAAGTGG__
6._TSA_656
CT____CC__CCACCG__ACAAGTGG__
7._TSA_656
CT____CC__CCACCG__ACAAGTGG__
8._TSA_656
CT____CC__CCACCG__ACAAGTGG__
9._TSA_656
CT____CC__CCACCG__ACAAGTGG__
10._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
11._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
12._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
13._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
14._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
15._RUQ_1016
CC____CC__TTCCCG__ACAAGGGG__
16._TSA_656
CC____CC__CTCCCG__ACAAGTGG__
17._TSA_656
CC____CC__CTCCCG__ACAAGTGG__
18._TSA_656
CC____CC__CTCCCG__ACAAGTGG__
19._TSA_656
CC____CC__CTCCCG__ACAAGTGG__
20._TSA_656
CC____CC__CTCCCG__ACAAGTGG__
21._RUQ_1016
__TTGGCCCCTTCC__GGCCAAGGGGAG
22._RUQ_1016
____GG____________ACAA__GGAG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCCAGCTACAGCCACAGACCCCCAACC
1._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
2._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
3._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
4._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
5._TSA_656
____AGCT__________ACCC______
6._TSA_656
____AGCT__________ACCC______
7._TSA_656
____AGCT__________ACCC______
8._TSA_656
____AGCT__________ACCC______
9._TSA_656
____AGCT__________ACCC______
10._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
11._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
12._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
13._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
14._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCC__CC
15._RUQ_1016
____AGCC__________AACG______
16._TSA_656
____AACC__________AACG______
17._TSA_656
____AACC__________AACG______
18._TSA_656
____AACC__________AACG______
19._TSA_656
____AACC__________AACG______
20._TSA_656
____AACC__________AACG______
21._RUQ_1016
__________________AACG____CC
22._RUQ_1016
____AG____________AACG____CC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
1._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
2._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
3._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
4._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
5._TSA_656
TTCTCT__AG__CCGTCT____X_XX_XX_X
6._TSA_656
TTCTCT__AG__CCGTCT____X_XX_XX_X
7._TSA_656
TTCTCT__AG__CCGTCT____X_XX_XX_X
8._TSA_656
TTCTCT__AG__CCGTCT____X_XX_XX_X
9._TSA_656
TTCTCT__AG__CCGTCT____X_XX_XX_X
10._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
11._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
12._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
13._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
14._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
15._RUQ_1016
CTCTCC__AG__CTGTCT____X_XX_XX_X
16._TSA_656
CTCTCC__AG__CTGTCT____X_XX_XX_X
17._TSA_656
CTCTCC__AG__CTGTCT____X_XX_XX_X
18._TSA_656
CTCTCC__AG__CTGTCT____X_XX_XX_X
19._TSA_656
CTCTCC__AG__CTGTCT____X_XX_XX_X
20._TSA_656
CTCTCC__AG__CTGTCT____X_XX_XX_X
21._RUQ_1016
CT______AGCCCTGT______X_XX_XX_X
22._RUQ_1016
____CC____CC__GT______X_XX_XX_X

Input profile: TSA_656 GC-08-257-8-25

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._TSA_656 GC-08-257-8-25

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._TSA_656 GC-08-257-8-25

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._TSA_656 GC-08-257-8-25

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 8
 Dapeng Zhang, 2016

6._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

7._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

8._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 7
 Dapeng Zhang, 2016

9._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 4
 Dapeng Zhang, 2016

10._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._TSA_656 RUQ_1016

75 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 10
 Dapeng Zhang, 2016

17._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 6
 Dapeng Zhang, 2016

18._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 3
 Dapeng Zhang, 2016

19._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 2
 Dapeng Zhang, 2016

20._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 1
 Dapeng Zhang, 2016

21._TSA_656 RUQ_1016

69.8 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._TSA_656 RUQ_1016

69 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240