SNP Profiles of CATONGO-01   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCC
1._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
2._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
3._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
4._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
5._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
6._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
7._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
13._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
14._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
15._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
16._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
17._CATONGO_1___
AAAATTAAGGGGCCCCCCCCGGTTCCTT
18._CATONGO_1___
AAAA__AAGGGG__GGGG__GGAAGGGG
19._CATONGO_1___
AAAA__AAGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAACCCCTTAATTGGTTAACCGGAA
1._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
2._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
3._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
4._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
5._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
6._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGG__
7._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
8._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
9._CATONGO_1___
AACCAACCCCTTAATT__TTAACCGGAA
10._CATONGO_1___
AACCAACCCCTTAATTGGTTAACCGGAA
11._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
12._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
13._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
14._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
15._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
16._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
17._CATONGO_1___
AACCAACCCCCTAATTGGTTAACCGGAA
18._CATONGO_1___
TTCCAA__CCAAGGAAGGTTAAGGCCAA
19._CATONGO_1___
TTCCAA__CCAGGGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAACCCCGGTTGGTTGGTTAACCGG
1._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
2._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
3._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
4._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
5._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
6._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
7._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
8._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
9._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
10._CATONGO_1___
TTGGAACCCCGGTTGGTTGGTTAACCGG
11._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
12._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
13._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
14._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
15._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
16._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
17._CATONGO_1___
TTTTAACCCCGGTTGGTTGGTTAACCGG
18._CATONGO_1___
AACCAACCCCGGAA__AAGGAAAAGGCC
19._CATONGO_1___
AAAAAACCCCGGAA__AAGGAAAAGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
2._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
3._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
4._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
5._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
6._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
7._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
8._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
9._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
10._CATONGO_1___
TTCCAAGGAACCCC__GGTTTTCCTTTT
11._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
12._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
13._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
14._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
15._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
16._CATONGO_1___
TTCCAAGGAACCCCGGGGTTTTCCTTTT
17._CATONGO_1___
TTCCAAGGAACCCCGGGG__TTCCTTTT
18._CATONGO_1___
__GG__GGAAGG__GGGGAAAAGGAAAA
19._CATONGO_1___
__GG__GGAAGG__GGGGAAAAGGAAAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AACCTTCCAAGGGGAAAATTGGGGTTCC
1._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
2._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
3._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
4._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
5._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
6._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
7._CATONGO_1___
__CCTTCCAAGGGGAAAATTGGGGTTCC
8._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
9._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
10._CATONGO_1___
AACCTTCCAAGGGGAAAATTGGGGTTCC
11._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
12._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
13._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
14._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
15._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
16._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
17._CATONGO_1___
AACCTTTTAAGGGGACAATTGGGGTTCC
18._CATONGO_1___
AAGGAAGGAAGGGGAAAAAACCGG____
19._CATONGO_1___
AAGGAAAAAAGGGGACAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTAAAACCAAAACCGGCCTTAATTTT
1._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
2._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
3._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
4._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
5._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
6._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
7._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
8._CATONGO_1___
GGTTAAAACCAAAA__GGCCTTAATTTT
9._CATONGO_1___
GGTTAAAACCAAAA__GGCCTTAATTTT
10._CATONGO_1___
GG__AAAACCAAAACCGGCCTTAATTTT
11._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
12._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
13._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
14._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
15._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
16._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
17._CATONGO_1___
GGTTAAAACCAAAACCGGCCTTAATTTT
18._CATONGO_1___
__AAAAAACCAA__CCCCGGTTAAAAAA
19._CATONGO_1___
__AAAAAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92       
_Input profile
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
1._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
2._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
3._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
4._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
5._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
6._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
7._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
8._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
9._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
10._CATONGO_1___
TTCCAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
11._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
12._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
13._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
14._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
15._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
16._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
17._CATONGO_1___
TTTTAATTCCTTAAGGX_XX_XX_XX_XX_XX_X
18._CATONGO_1___
__GG____GGAATTGGX_XX_XX_XX_XX_XX_X
19._CATONGO_1___
__AA____GGAATTGGX_XX_XX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-277-8-49

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._CATONGO_1 GC-08-277-8-49

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

3._CATONGO_1 GC-08-109-3-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CATONGO_1 GC-08-109-3-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._CATONGO_1 GC-08-109-3-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._CATONGO_1 GC-08-278-8-50

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

17._CATONGO_1 GC-08-278-8-50

94.5 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._CATONGO_1 GC-08-109-3-8

49.4 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-277-8-49

48.7 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1414
91TcSNP154 92TcSNP240