SNP Profiles of CATONGO-01   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCCC
1._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
2._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
3._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
4._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
5._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
6._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
7._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
13._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
14._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
15._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
16._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
17._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
18._GC-08-109-3-8
AAAA_AAGGGG_GGGG_GGAAGGGG
19._GC-08-277-8-49
AAAA_AAGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCCCTTAATTGGTTAACCGG
1._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
2._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
3._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
4._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
5._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
6._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
7._GC-08-278-8-50
AACCAAGGCCCCTTAATT_TTAACCGG
8._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
9._GC-08-277-8-49
AACCAA_CCCCTTAATTGGTTAACCGG
10._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
11._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
12._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
13._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
14._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
15._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
16._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
17._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
18._GC-08-109-3-8
TTCCAACC_CCAAGGAAGGTTAAGGCC
19._GC-08-277-8-49
TTCCAACC_CCAGGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
TTGGAACCCCGGTTGGTTGGTTAACCGG
1._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
2._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
3._GC-08-109-3-08
TTGGAACCCCGGTTGGTTGGTTAACCGG
4._GC-08-109-3-08
TTGGAACCCCGGTTGGTTGGTTAACCGG
5._GC-08-109-3-08
TTGGAACCCCGGTTGGTTGGTTAACCGG
6._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
7._GC-08-278-8-50
TTGGAACCCCGGTTGGTTGGTTAACCGG
8._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
9._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
10._GC-08-277-8-49
TTGGAACCCCGGTTGGTTGGTTAACCGG
11._GC-08-277-8-49
TTTTAACCCCGGTTGGTTGGTTAACCGG
12._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
13._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
14._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
15._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
16._GC-08-277-8-49
TTTTAACCCCGGTTGGTTGGTTAACCGG
17._GC-08-278-8-50
TTTTAACCCCGGTTGGTTGGTTAACCGG
18._GC-08-109-3-8
AACCAACCCCGGAA_AAGGAAAAGGCC
19._GC-08-277-8-49
AAAAAACCCCGGAA_AAGGAAAAGGCC
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
2._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
3._GC-08-109-3-08
TTCCAAGGAACCCCGGGGTTTTCCTTTT
4._GC-08-109-3-08
TTCCAAGGAACCCCGGGGTTTTCCTTTT
5._GC-08-109-3-08
TTCCAAGGAACCCCGGGGTTTTCCTTTT
6._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
7._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
8._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
9._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
10._GC-08-277-8-49
TTCCAAGGAACCCC_GGTTTTCCTTTT
11._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
12._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
13._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
14._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
15._GC-08-278-8-50
TTCCAAGGAACCCCGGGGTTTTCCTTTT
16._GC-08-277-8-49
TTCCAAGGAACCCCGGGGTTTTCCTTTT
17._GC-08-278-8-50
TTCCAAGGAACCCCGGGG_TTCCTTTT
18._GC-08-109-3-8
_GG_GGAAGG_GGGGAAAAGGAAAA
19._GC-08-277-8-49
_GG_GGAAGG_GGGGAAAAGGAAAA
 5758596061626364656667686970
_Input profile
AACCTTCCAAGGGGAAAATTGGGGTTCC
1._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
2._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
3._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
4._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
5._GC-08-109-3-08
AACCTTCCAAGGGGAAAATTGGGGTTCC
6._GC-08-277-8-49
_CCTTCCAAGGGGAAAATTGGGGTTCC
7._GC-08-278-8-50
AACCTTCCAAGGGGAAAATTGGGGTTCC
8._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
9._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
10._GC-08-277-8-49
AACCTTCCAAGGGGAAAATTGGGGTTCC
11._GC-08-277-8-49
AACCTTTTAAGGGGACAATTGGGGTTCC
12._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
13._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
14._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
15._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
16._GC-08-277-8-49
AACCTTTTAAGGGGACAATTGGGGTTCC
17._GC-08-278-8-50
AACCTTTTAAGGGGACAATTGGGGTTCC
18._GC-08-109-3-8
AAGGAAGGAAGGGGAAAAAACCGG__
19._GC-08-277-8-49
AAGGAAAAAAGGGGACAAAACCGG__
 7172737475767778798081828384
_Input profile
GGTTAAAACCAAAACCGGCCTTAATTTT
1._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
2._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
3._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
4._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
5._GC-08-109-3-08
GGTTAAAACCAAAACCGGCCTTAATTTT
6._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
7._GC-08-278-8-50
GGTTAAAACCAAAA_GGCCTTAATTTT
8._GC-08-277-8-49
GGTTAAAACCAAAA_GGCCTTAATTTT
9._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
10._GC-08-277-8-49
GG_AAAACCAAAACCGGCCTTAATTTT
11._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
12._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
13._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
14._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
15._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
16._GC-08-277-8-49
GGTTAAAACCAAAACCGGCCTTAATTTT
17._GC-08-278-8-50
GGTTAAAACCAAAACCGGCCTTAATTTT
18._GC-08-109-3-8
_AAAAAACCAA_CCCCGGTTAAAAAA
19._GC-08-277-8-49
_AAAAAACCAA_CCCCGGTTAAAAAA
 858687888990919293     
_Input profile
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-08-109-3-08
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-08-277-8-49
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-08-278-8-50
TTCCAATTCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-08-277-8-49
TTCCAATTCC_TTAAGGX_XX_XX_XX_XX_X
9._GC-08-277-8-49
TTCCAATTCC_TTAAGGX_XX_XX_XX_XX_X
10._GC-08-277-8-49
TTCCAATTCC_TTAAGGX_XX_XX_XX_XX_X
11._GC-08-277-8-49
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
16._GC-08-277-8-49
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
17._GC-08-278-8-50
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-08-109-3-8
_GG__GGAAAATTGGX_XX_XX_XX_XX_X
19._GC-08-277-8-49
_AA__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-277-8-49

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._CATONGO_1 GC-08-277-8-49

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

3._CATONGO_1 GC-08-109-3-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._CATONGO_1 GC-08-109-3-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._CATONGO_1 GC-08-109-3-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._CATONGO_1 GC-08-277-8-49

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._CATONGO_1 GC-08-278-8-50

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._CATONGO_1 GC-08-277-8-49

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

10._CATONGO_1 GC-08-277-8-49

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._CATONGO_1 GC-08-278-8-50

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

17._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._CATONGO_1 GC-08-109-3-8

47.4 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-277-8-49

46.8 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240