SNP Profiles of CATONGO-01   View Data

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 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
8._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
9._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
10._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
11._GC-08-109-3-08
AAAATTAAGGGGCCCCCCCCGGTTCCCC
12._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
13._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
14._GC-08-278-8-50
AAAATTAAGGGGCCCCCCCCGGTTCCCC
15._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
16._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
17._GC-08-277-8-49
AAAATTAAGGGGCCCCCCCCGGTTCCCC
18._GC-08-277-8-49
AAAA_AAGGGG_GGGG_GGAAGGAA
19._GC-08-109-3-8
AAAA_AAGGGG_GGGG_GGAAGGGG
 1516171819202122232425262728
_Input profile
AACCAAGGCCCCCTAATTGGTTAACCGG
1._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
2._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
3._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
4._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
5._GC-08-277-8-49
AACCAAGGCCCCCTAATTGGTTAACCGG
6._GC-08-278-8-50
AACCAAGGCCCCCTAATTGGTTAACCGG
7._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
8._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
9._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
10._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
11._GC-08-109-3-08
AACCAAGGCCCCTTAATTGGTTAACCGG
12._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
13._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
14._GC-08-278-8-50
AACCAAGGCCCCTTAATT_TTAACCGG
15._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
16._GC-08-277-8-49
AACCAA_CCCCTTAATTGGTTAACCGG
17._GC-08-277-8-49
AACCAAGGCCCCTTAATTGGTTAACCGG
18._GC-08-277-8-49
TTCCAACC_CCAGGGAAGGTTAAGGCC
19._GC-08-109-3-8
TTCCAACC_CCAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTTTAACCCCGGTTGGTTGGTTAACC
1._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
2._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
3._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
4._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
5._GC-08-277-8-49
AATTTTAACCCCGGTTGGTTGGTTAACC
6._GC-08-278-8-50
AATTTTAACCCCGGTTGGTTGGTTAACC
7._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
8._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
9._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
10._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
11._GC-08-109-3-08
AATTGGAACCCCGGTTGGTTGGTTAACC
12._GC-08-277-8-49
_TTGGAACCCCGGTTGGTTGGTTAACC
13._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
14._GC-08-278-8-50
AATTGGAACCCCGGTTGGTTGGTTAACC
15._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
16._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
17._GC-08-277-8-49
AATTGGAACCCCGGTTGGTTGGTTAACC
18._GC-08-277-8-49
AAAAAAAACCCCGGAA_AAGGAAAAGG
19._GC-08-109-3-8
AAAACCAACCCCGGAA_AAGGAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
5._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
6._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGG_TTCCTT
7._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
8._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
9._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTTTCCTT
10._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTTTCCTT
11._GC-08-109-3-08
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._GC-08-278-8-50
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
16._GC-08-277-8-49
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._GC-08-277-8-49
GGTTCCAAGGAACCCC_GGTTTTCCTT
18._GC-08-277-8-49
CC_GG_GGAAGG_GGGGAAAAGGAA
19._GC-08-109-3-8
CC_GG_GGAAGG_GGGGAAAAGGAA
 5758596061626364656667686970
_Input profile
TTAACCTTTTAAGGGGACAATTGGGGTT
1._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
2._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
3._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
4._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
5._GC-08-277-8-49
TTAACCTTTTAAGGGGACAATTGGGGTT
6._GC-08-278-8-50
TTAACCTTTTAAGGGGACAATTGGGGTT
7._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
8._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
9._GC-08-109-3-08
TTAACCTTCCAAGGGGAAAATTGGGGTT
10._GC-08-109-3-08
TTAACCTTCCAAGGGGAAAATTGGGGTT
11._GC-08-109-3-08
TTAACCTTCCAAGGGGAAAATTGGGGTT
12._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
13._GC-08-277-8-49
TT_CCTTCCAAGGGGAAAATTGGGGTT
14._GC-08-278-8-50
TTAACCTTCCAAGGGGAAAATTGGGGTT
15._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
16._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
17._GC-08-277-8-49
TTAACCTTCCAAGGGGAAAATTGGGGTT
18._GC-08-277-8-49
AAAAGGAAAAAAGGGGACAAAACCGG_
19._GC-08-109-3-8
AAAAGGAAGGAAGGGGAAAAAACCGG_
 7172737475767778798081828384
_Input profile
CCGGTTAAAACCAAAACCGGCCTTAATT
1._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
2._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
3._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
4._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
5._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
6._GC-08-278-8-50
CCGGTTAAAACCAAAACCGGCCTTAATT
7._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
8._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
9._GC-08-109-3-08
CCGGTTAAAACCAAAACCGGCCTTAATT
10._GC-08-109-3-08
CCGGTTAAAACCAAAACCGGCCTTAATT
11._GC-08-109-3-08
CCGGTTAAAACCAAAACCGGCCTTAATT
12._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
13._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
14._GC-08-278-8-50
CCGGTTAAAACCAAAA_GGCCTTAATT
15._GC-08-277-8-49
CCGGTTAAAACCAAAA_GGCCTTAATT
16._GC-08-277-8-49
CCGGTTAAAACCAAAACCGGCCTTAATT
17._GC-08-277-8-49
CCGG_AAAACCAAAACCGGCCTTAATT
18._GC-08-277-8-49
__AAAAAACCAA_CCCCGGTTAAAA
19._GC-08-109-3-8
__AAAAAACCAA_CCCCGGTTAAAA
 85868788899091929394    
_Input profile
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
1._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
2._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
3._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
4._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
5._GC-08-277-8-49
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
6._GC-08-278-8-50
TTTTTTAATTCCTTTTAAGGX_XX_XX_XX_X
7._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
8._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
9._GC-08-109-3-08
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
10._GC-08-109-3-08
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
11._GC-08-109-3-08
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
12._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
13._GC-08-277-8-49
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
14._GC-08-278-8-50
TTTTCCAATTCCTTTTAAGGX_XX_XX_XX_X
15._GC-08-277-8-49
TTTTCCAATTCC_TTAAGGX_XX_XX_XX_X
16._GC-08-277-8-49
TTTTCCAATTCC_TTAAGGX_XX_XX_XX_X
17._GC-08-277-8-49
TTTTCCAATTCC_TTAAGGX_XX_XX_XX_X
18._GC-08-277-8-49
AA_AA__GGAAAATTGGX_XX_XX_XX_X
19._GC-08-109-3-8
AA_GG__GGAAAATTGGX_XX_XX_XX_X

Input profile: CATONGO_1 GC-08-277-8-49

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

1._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._CATONGO_1 GC-08-278-8-50

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CATONGO_1 GC-08-277-8-49

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._CATONGO_1 GC-08-278-8-50

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._CATONGO_1 GC-08-277-8-49

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._CATONGO_1 GC-08-277-8-49

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP4
 Mars, 2018

9._CATONGO_1 GC-08-109-3-08

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._CATONGO_1 GC-08-109-3-08

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._CATONGO_1 GC-08-109-3-08

94.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._CATONGO_1 GC-08-277-8-49

94.6 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._CATONGO_1 GC-08-278-8-50

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

16._CATONGO_1 GC-08-277-8-49

94.6 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._CATONGO_1 GC-08-277-8-49

94.5 %
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._CATONGO_1 GC-08-277-8-49

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._CATONGO_1 GC-08-109-3-8

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240