SNP Profiles of IMC 47 View Data

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_Input profile	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
1._PA_56_[PER]___	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
2._PA_56_[PER]___	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
3._PA_56_[PER]___	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
4._PA_56_[PER]___	AA	AC	CT	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
5._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
6._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
7._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
8._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
9._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
10._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
11._PA_56_[PER]___	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
12._PA_56_[PER]___	__	__	CT	CC	__	__	CT	__	CC	__	__	TT	CC	__
13._PA_56_[PER]___	__	__	__	CC	__	__	CT	__	__	__	__	__	__	__
14._PA_56_[PER]___	AA	AC	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
1._PA_56_[PER]___	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
2._PA_56_[PER]___	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
3._PA_56_[PER]___	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	AA	CC	GG
4._PA_56_[PER]___	AA	CC	GG	CG	CC	GG	CC	AA	TT	GG	AA	__	CC	GG
5._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
6._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
7._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
8._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
9._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	__	__	GG
10._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
11._PA_56_[PER]___	__	__	GG	__	__	GG	__	__	__	__	AA	AA	__	GG
12._PA_56_[PER]___	__	__	__	__	CC	__	__	__	__	GG	__	AA	CC	GG
13._PA_56_[PER]___	__	__	GG	TT	__	__	__	__	__	__	__	__	__	GG
14._PA_56_[PER]___	TT	CC	GG	CG	__	GG	GG	GG	AA	GG	AA	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
1._PA_56_[PER]___	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
2._PA_56_[PER]___	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
3._PA_56_[PER]___	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
4._PA_56_[PER]___	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	GG	TT	AG	CC
5._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
6._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
7._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
8._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
9._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
10._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
11._PA_56_[PER]___	AA	__	__	__	CG	__	AG	GG	__	__	GG	__	__	__
12._PA_56_[PER]___	__	__	__	GG	CG	CC	AG	GG	__	__	GG	TT	__	__
13._PA_56_[PER]___	__	__	__	__	CG	__	AG	__	__	__	__	__	__	__
14._PA_56_[PER]___	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	GG	AA	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
1._PA_56_[PER]___	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
2._PA_56_[PER]___	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
3._PA_56_[PER]___	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
4._PA_56_[PER]___	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
5._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
6._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
7._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
8._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
9._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
10._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
11._PA_56_[PER]___	__	__	CC	__	__	__	__	__	__	__	__	__	CC	CC
12._PA_56_[PER]___	GG	TT	__	__	GG	__	__	__	__	__	__	CT	CC	__
13._PA_56_[PER]___	__	__	__	__	GG	__	__	__	__	__	__	__	__	__
14._PA_56_[PER]___	CC	__	GG	__	GG	AA	GG	__	GG	AG	CC	AG	GG	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
1._PA_56_[PER]___	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
2._PA_56_[PER]___	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
3._PA_56_[PER]___	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
4._PA_56_[PER]___	TT	GG	CC	CC	CT	AA	GG	GG	CC	AG	GT	GG	AG	CT
5._PA_56_[PER]___	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
6._PA_56_[PER]___	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
7._PA_56_[PER]___	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
8._PA_56_[PER]___	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
9._PA_56_[PER]___	__	__	CC	__	CT	AA	GG	__	CC	AG	GT	GG	__	__
10._PA_56_[PER]___	__	__	CC	__	CT	AC	GG	__	CC	AG	GT	GG	__	__
11._PA_56_[PER]___	__	__	CC	__	CT	AC	GG	__	CC	AG	GT	GG	__	__
12._PA_56_[PER]___	TT	__	CC	CC	CT	AC	__	GG	CC	AG	GT	GG	AG	__
13._PA_56_[PER]___	__	GG	__	__	__	__	__	__	CC	AG	__	GG	AG	__
14._PA_56_[PER]___	AA	GG	GG	GG	AG	AC	GG	GG	CC	AG	AC	CC	AG	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
1._PA_56_[PER]___	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
2._PA_56_[PER]___	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
3._PA_56_[PER]___	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
4._PA_56_[PER]___	CC	GG	CT	AC	AG	AC	AA	AG	AC	CG	CC	AT	AA	TT
5._PA_56_[PER]___	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
6._PA_56_[PER]___	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
7._PA_56_[PER]___	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
8._PA_56_[PER]___	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
9._PA_56_[PER]___	__	GG	CT	__	__	__	__	__	AC	CG	__	__	__	TT
10._PA_56_[PER]___	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	TT
11._PA_56_[PER]___	__	AA	CT	__	__	__	__	__	AC	CG	__	__	__	TT
12._PA_56_[PER]___	__	__	__	__	__	__	__	__	AC	CG	__	__	AA	TT
13._PA_56_[PER]___	__	AA	__	__	__	__	__	__	AA	CG	__	__	AA	__
14._PA_56_[PER]___	__	__	AG	AC	AG	AC	AA	__	AC	CG	GG	AT	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
1._PA_56_[PER]___	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
2._PA_56_[PER]___	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
3._PA_56_[PER]___	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
4._PA_56_[PER]___	CT	CC	CT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
6._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
7._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
8._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
9._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
10._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
11._PA_56_[PER]___	CT	CC	__	AA	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X
12._PA_56_[PER]___	__	__	__	AA	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X
13._PA_56_[PER]___	__	CC	__	__	__	__	TT	__	__	__	X_X	X_X	X_X	X_X
14._PA_56_[PER]___	AG	__	AG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: PA_56_[PER] NA

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

1._PA_56_[PER] NA

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

2._PA_56_[PER] NA

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

3._PA_56_[PER] NA

identical
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._PA_56_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

6._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

7._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

8._PA_56_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

9._PA_56_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

10._PA_56_[PER] RUQ_32

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_56_[PER]

96.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._PA_56_[PER] RUQ_32

84.2 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

14._PA_56_[PER] -

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240