SNP Profiles of GU 300 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._SIAL_88___
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
12._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
13._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
14._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
15._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
16._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
17._SIAL_88___
AAAATTAAGGGGCCCCCCCCGGTTCCCT
18._SIAL_88___
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._SIAL_88___
AAAA__AAGGGG__GGGG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCGCTAATTGGTTAACCGG
1._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
2._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
3._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
4._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
5._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
6._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
7._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
8._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
9._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
10._SIAL_88___
AACCAAGGCCCGCTAATTGGTTAACCGG
11._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
12._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
13._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
14._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
15._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
16._SIAL_88___
__CCAAGGCCGGTTAATTGGTTAACCGG
17._SIAL_88___
AACCAAGGCCGGTTAATTGGTTAACCGG
18._SIAL_88___
AACCAGGGCCCCTTAATTGGTTAACCGG
19._SIAL_88___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACGCCGGTTGGTTAGTTAACC
1._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
2._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
3._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
4._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
5._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
6._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
7._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
8._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
9._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
10._SIAL_88___
AATTGGAACGCCGGTTGGTTAGTTAACC
11._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
12._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
13._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
14._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
15._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
16._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
17._SIAL_88___
AATTGGAACCCCGGTTGGTTAATTAACC
18._SIAL_88___
AATTGTGGGGCCAAGGGGTTAACCAGCC
19._SIAL_88___
AAAACCAACCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGGTTTCCTT
1._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
2._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
3._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
4._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
5._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
6._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
7._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
9._SIAL_88___
GGTTCCAAGGAACCCCGGGGGTTTCCTT
10._SIAL_88___
GGTTCCAAGGAACCCCGGGG__TTCCTT
11._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._SIAL_88___
GGTTCCAAGGAACC__GGGGTTTTCCTT
16._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._SIAL_88___
GGTTCCAAGGAACCCCGGGGTTTT__TT
18._SIAL_88___
GGTTTTAAGGAACCCCGGAAGGTTCCCC
19._SIAL_88___
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGAATTGGGGTTCC
1._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
2._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
3._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
4._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
5._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
6._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
7._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
8._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
9._SIAL_88___
TTAACCTTCCAAGGGG__TTGGGGTTCC
10._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
11._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
12._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
13._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
14._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
15._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
16._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
17._SIAL_88___
TTAACCTTCCAAGGGGAATTGGGGTTCC
18._SIAL_88___
TTGGCCTTCCAAGGGGAATTGGGGTTCC
19._SIAL_88___
AAAAGGAAGGAAGGGGAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTACAACCAAAACCGGCCTTAATTTT
1._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
2._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
3._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
4._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
5._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
6._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
7._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
8._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
9._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
10._SIAL_88___
GGTTACAACCAAAACCGGCCTTAATTTT
11._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
12._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
13._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
14._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
15._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
16._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
17._SIAL_88___
GGTTCCAACCAAAACCGGCCTTAATTTT
18._SIAL_88___
GGTTACAGACCCAGACGGCCATCCTTCT
19._SIAL_88___
__AACCAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
6._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
7._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
8._SIAL_88___
CTTTAACTCC__TTAAGGX_XX_XX_XX_XX_X
9._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
10._SIAL_88___
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
13._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
14._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
15._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
16._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
17._SIAL_88___
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
18._SIAL_88___
CCCTAGCCCCTTTTATGGX_XX_XX_XX_XX_X
19._SIAL_88___
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: SIAL_88 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SIAL_88 NA

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SIAL_88 GC-01-052-3-07

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._SIAL_88 NA

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._SIAL_88 GC-01-052-3-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._SIAL_88 GC-01-052-3-07

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

11._SIAL_88 NA

95.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SIAL_88 NA

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._SIAL_88 NA

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

95.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

43.7 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240