SNP Profiles of SIAL-88   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGGGCCCCCCCCGGTTCCCT
1._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
2._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
3._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
4._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
5._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
6._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
7._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
8._NA
AAAATTACGGGGCCCCCCCCGGTTCCCT
9._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
10._GC-01-052-3-07
AAAATTACGGGGCCCCCCCCGGTTCCCT
11._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
12._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
13._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
14._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
15._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
16._NA
AAAATTAAGGGGCCCCCCCCGGTTCCCT
17._GC-01-052-3-07
AAAATTAAGGGGCCCCCCCCGGTTCCCT
18._GC-01-052-3-07
AAACCCACGGGGCTCCCCCCGGTTCCTT
19._GC-01-52-3-7
AAAA__AAGGGG__GGGG__GGAAGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCCGCTAATTGGTTAACCGG
1._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
2._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
3._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
4._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
5._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
6._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
7._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
8._NA
AACCAAGGCCCGCTAATTGGTTAACCGG
9._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
10._GC-01-052-3-07
AACCAAGGCCCGCTAATTGGTTAACCGG
11._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
12._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
13._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
14._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
15._NA
AACCAAGGCCGGTTAATTGGTTAACCGG
16._NA
__CCAAGGCCGGTTAATTGGTTAACCGG
17._GC-01-052-3-07
AACCAAGGCCGGTTAATTGGTTAACCGG
18._GC-01-052-3-07
AACCAGGGCCCCTTAATTGGTTAACCGG
19._GC-01-52-3-7
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACGCCGGTTGGTTAGTTAACC
1._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
2._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
3._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
4._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
5._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
6._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
7._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
8._NA
AATTGGAACGCCGGTTGGTTAGTTAACC
9._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
10._GC-01-052-3-07
AATTGGAACGCCGGTTGGTTAGTTAACC
11._NA
AATTGGAACCCCGGTTGGTTAATTAACC
12._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
13._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
14._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
15._NA
AATTGGAACCCCGGTTGGTTAATTAACC
16._NA
AATTGGAACCCCGGTTGGTTAATTAACC
17._GC-01-052-3-07
AATTGGAACCCCGGTTGGTTAATTAACC
18._GC-01-052-3-07
AATTGTGGGGCCAAGGGGTTAACCAGCC
19._GC-01-52-3-7
AAAACCAACCCCGGAACCAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGGTTTCCTT
1._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
2._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
3._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
4._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
5._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
6._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
7._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGGTTTCCTT
8._NA
GGTTCCAAGGAACCCCGGGGGTTTCCTT
9._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGGTTTCCTT
10._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGG__TTCCTT
11._NA
GGTTCCAAGGAACCCCGGGGTTTTCCTT
12._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
13._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
14._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTTCCTT
15._NA
GGTTCCAAGGAACC__GGGGTTTTCCTT
16._NA
GGTTCCAAGGAACCCCGGGGTTTTCCTT
17._GC-01-052-3-07
GGTTCCAAGGAACCCCGGGGTTTT__TT
18._GC-01-052-3-07
GGTTTTAAGGAACCCCGGAAGGTTCCCC
19._GC-01-52-3-7
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGAATTGGGGTTCC
1._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
2._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
3._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
4._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
5._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
6._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
7._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
8._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
9._GC-01-052-3-07
TTAACCTTCCAAGGGG__TTGGGGTTCC
10._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
11._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
12._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
13._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
14._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
15._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
16._NA
TTAACCTTCCAAGGGGAATTGGGGTTCC
17._GC-01-052-3-07
TTAACCTTCCAAGGGGAATTGGGGTTCC
18._GC-01-052-3-07
TTGGCCTTCCAAGGGGAATTGGGGTTCC
19._GC-01-52-3-7
AAAAGGAAGGAAGGGGAAAACCGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTACAACCAAAACCGGCCTTAATTTT
1._NA
GGTTACAACCAAAACCGGCCTTAATTTT
2._NA
GGTTACAACCAAAACCGGCCTTAATTTT
3._NA
GGTTACAACCAAAACCGGCCTTAATTTT
4._NA
GGTTACAACCAAAACCGGCCTTAATTTT
5._NA
GGTTACAACCAAAACCGGCCTTAATTTT
6._NA
GGTTACAACCAAAACCGGCCTTAATTTT
7._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
8._NA
GGTTACAACCAAAACCGGCCTTAATTTT
9._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
10._GC-01-052-3-07
GGTTACAACCAAAACCGGCCTTAATTTT
11._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
12._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
13._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
14._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
15._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
16._NA
GGTTCCAACCAAAACCGGCCTTAATTTT
17._GC-01-052-3-07
GGTTCCAACCAAAACCGGCCTTAATTTT
18._GC-01-052-3-07
GGTTACAGACCCAGACGGCCATCCTTCT
19._GC-01-52-3-7
__AACCAACCAA__CCCCGGTTAAAAAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
6._NA
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
8._NA
CTTTAACTCC__TTAAGGX_XX_XX_XX_XX_X
9._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
10._GC-01-052-3-07
CTTTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
15._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
16._NA
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
17._GC-01-052-3-07
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
18._GC-01-052-3-07
CCCTAGCCCCTTTTATGGX_XX_XX_XX_XX_X
19._GC-01-52-3-7
__AA____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: SIAL_88 NA

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._SIAL_88 NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SIAL_88 NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SIAL_88 NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SIAL_88 NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._SIAL_88 NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SIAL_88 NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SIAL_88 GC-01-052-3-07

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._SIAL_88 NA

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._SIAL_88 GC-01-052-3-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._SIAL_88 GC-01-052-3-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

11._SIAL_88 NA

95.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._SIAL_88 GC-01-052-3-07

95.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SIAL_88 NA

95.1 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._SIAL_88 NA

95.1 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._SIAL_88 GC-01-052-3-07

95.1 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

18._SIAL_88 GC-01-052-3-07

76.3 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SIAL_88 GC-01-52-3-7

43.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240