SNP Profiles of ICS 40   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_9___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._ICS_9___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._ICS_9___
AAAACTAC________CTCTGG__CC__
4._ICS_9___
AAAACTAC________CTCTGG__CC__
5._ICS_9___
AAAACTAC________CTCTGG__CC__
6._ICS_9___
AAAACCCC________CCCTGG__CC__
7._ICS_9___
AAAACCCC________CCCTGG__CC__
8._ICS_9___
AAAACCCC________CCCTGG__CC__
9._ICS_9___
AAAACCCC________CCCTGG__CC__
10._ICS_9___
AAAACCCCAGAGCTCCCCCTGGCCCCCT
11._ICS_9___
AAAACCCCAGAGCTCCCCCTGGCCCCCT
12._ICS_9___
AAAACCCCAGAGCTCCCCCTGGCCCCCT
13._ICS_9___
AAAACCCCAGAGCTCCCCCTGGCCCCCT
14._ICS_9___
AAAACCCC________CCCTGG__CC__
15._ICS_9___
AAAACCCC________CCCTGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_9___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_9___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_9___
______AA____GG________ATAT__
4._ICS_9___
______AA____GG________ATAT__
5._ICS_9___
______AA____GG________ATAT__
6._ICS_9___
______AA____GG________ATAT__
7._ICS_9___
______AA____GG________ATAT__
8._ICS_9___
______AA____GG________ATAT__
9._ICS_9___
______AA____GG________ATAT__
10._ICS_9___
ATCCAAAAGGGGGGCTGGTTAGATATCG
11._ICS_9___
ATCCAAAAGGGGGGCTGGTTAGATATCG
12._ICS_9___
ATCCAAAAGGGGGGCTGGTTAGATATCG
13._ICS_9___
ATCCAAAAGGGGGGCTGGTTAGATATCG
14._ICS_9___
______AA____GG________ATAT__
15._ICS_9___
______AA____GG________ATAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAAGTGGGTAGCCAA
1._ICS_9___
CGAACTGTAGCCACAAGTGGGTAGCCAA
2._ICS_9___
__AACTGTAGCCACAAGTGGGTAGCCAA
3._ICS_9___
CGAA______CC__AAGT____AG____
4._ICS_9___
CGAA______CC__AAGT____AG____
5._ICS_9___
__AA______CC__AAGT____AG____
6._ICS_9___
GGAA______CC__AATT____AG____
7._ICS_9___
GGAA______CC__AATT____AG____
8._ICS_9___
GGAA______CC__AATT____AG____
9._ICS_9___
GGAA______CC__AATT____AG____
10._ICS_9___
GGAACTGGAGCCACAATTGGGTAGCTAA
11._ICS_9___
GGAACTGGAGCCACAATTGGGTAGCTAA
12._ICS_9___
GGAACTGGAGCCACAATTGGGTAGCTAA
13._ICS_9___
GGAACTGGAGCCACAATTGGGTAGCTAA
14._ICS_9___
GGAA______CC__AATT____AG____
15._ICS_9___
GGAA______CC__AATT____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGAGAGCTCCGGGGGTTTCT
1._ICS_9___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
2._ICS_9___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
3._ICS_9___
______CC__________________CT
4._ICS_9___
______CC__________________CT
5._ICS_9___
______CC__________________CT
6._ICS_9___
______CC__________________CT
7._ICS_9___
______CC__________________CT
8._ICS_9___
______CC__________________CT
9._ICS_9___
__________________________CT
10._ICS_9___
CCTTAACCAGAGGGCTCCGGGGGT__CT
11._ICS_9___
CCTTAACCAGAGGGCTCCGGGGGT__CT
12._ICS_9___
CCTTAA__AGAGGGCTCCGGGGGT__CT
13._ICS_9___
CCTTAACCAGAGGGCTCCGGGGGT__CT
14._ICS_9___
______CC__________________CT
15._ICS_9___
______CC__________________CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTGGCGCTCTACGGAGACAGGTGTAG
1._ICS_9___
CTGTGGCGCTCTACGGAGACAGGTGTAG
2._ICS_9___
CTGTGGCGCTCTACGGAGACAGGTGTAG
3._ICS_9___
CT____CG__CTACGG__ACAGGTGT__
4._ICS_9___
CT____CG__CTACGG__ACAGGTGT__
5._ICS_9___
CT____CG__CTACGG__ACAGGTGT__
6._ICS_9___
CT____GG__CTACGG__CCAGTTGT__
7._ICS_9___
CT____GG__CTACGG__CCAGTTGT__
8._ICS_9___
______GG__CTACGG__CCAGTTGT__
9._ICS_9___
CT____GG__CTACGG__CCAGTTGT__
10._ICS_9___
CTGGAAGGCTCTACGGAGCCAGTTGTGG
11._ICS_9___
CTGGAAGGCTCTACGGAGCCAGTTGTGG
12._ICS_9___
CTGGAAGGCTCTACGGAGCCAGTTGTGG
13._ICS_9___
__GGAAGGCTCTACGGAGCCAGTTGTGG
14._ICS_9___
CT____GG__CTACGG__CCAGTTGT__
15._ICS_9___
CT____GG__CTACGG__CCAGTTGT__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTCCAGACAAAGCCCGCTATCC
1._ICS_9___
CTCCGGTTCCAGACAAAGCCCGCTATCC
2._ICS_9___
CTCCGGTTCCAGACAAAGCCCGCTATCC
3._ICS_9___
____GGTT__________CCCG______
4._ICS_9___
____GGTT__________CCCG______
5._ICS_9___
____GGTT__________CCCG______
6._ICS_9___
____GGTT__________CCCG______
7._ICS_9___
____GGTT__________CCCG______
8._ICS_9___
____GGTT__________CCCG______
9._ICS_9___
____GGTT__________CCCG______
10._ICS_9___
CTCCGGTTACGGCCAAGGCCCGCCAACC
11._ICS_9___
CTCCGGTTACGGCCAAGGCCCGCCAACC
12._ICS_9___
CTCCGGTTACGGCCAAGGCCCGCCAACC
13._ICS_9___
CTCCGGTTACGGCCAAGGCCCGCCAACC
14._ICS_9___
____AATT__________CCGG______
15._ICS_9___
____AATT__________CCGG______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
1._ICS_9___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
2._ICS_9___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
3._ICS_9___
CTCTCT__AG__CTGTTT____X_XX_XX_X
4._ICS_9___
CTCTCT__AG__CTGTTT____X_XX_XX_X
5._ICS_9___
CTCTCT__AG__CTGTTT____X_XX_XX_X
6._ICS_9___
TTCTCT__GG__CTGTTT____X_XX_XX_X
7._ICS_9___
TTCTCT__GG__CTGTTT____X_XX_XX_X
8._ICS_9___
TTCTCT__GG__CTGTTT____X_XX_XX_X
9._ICS_9___
TTCTCT__GG__CTGTTT____X_XX_XX_X
10._ICS_9___
TTCTCTTTGGCTCTGTTTTTGGX_XX_XX_X
11._ICS_9___
TTCTCTTTGGCTCTGTTTTTGGX_XX_XX_X
12._ICS_9___
TTCTCTTTGGCTCTGTTTTTGGX_XX_XX_X
13._ICS_9___
TTCTCTTTGGCTCTGTTTTTGGX_XX_XX_X
14._ICS_9___
TTCTCT__GG__CTGTCT____X_XX_XX_X
15._ICS_9___
TTCTCT__GG__CTGTCT____X_XX_XX_X

Input profile: ICS_9 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._ICS_9 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._ICS_9 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._ICS_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8902 5
 Dapeng Zhang, 2016

4._ICS_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8902 3
 Dapeng Zhang, 2016

5._ICS_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8902 6
 Dapeng Zhang, 2016

6._ICS_9

87.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 6
 Dapeng Zhang, 2016

7._ICS_9

87.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 1
 Dapeng Zhang, 2016

8._ICS_9

87.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 7
 Dapeng Zhang, 2016

9._ICS_9

87.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8901 4
 Dapeng Zhang, 2016

10._ICS_9 NA

84.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._ICS_9 NA

84.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._ICS_9 NA

84.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._ICS_9 NA

84.4 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._ICS_9

82.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

15._ICS_9

82.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240