SNP Profiles matching CCN 51

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
1._CCN_51___	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
2._CCN_51___	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
3._CCN_51___	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
4._CCN_51___	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
5._CCN_51___	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
6._CCN_51___	AA	AC	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CT	AA
7._CCN_51___	AA	AC	CT	__	GG	__	__	CC	CT	CC	GG	CC	CT	AA
8._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
9._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
10._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
11._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
12._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
13._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
14._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
15._CCN_51___	AA	AC	CT	__	__	__	__	__	CT	CC	GG	CC	__	__
16._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__
17._CCN_51___	AA	AC	CT	CC	__	__	__	__	CT	CC	GG	CC	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
1._CCN_51___	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
2._CCN_51___	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
3._CCN_51___	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
4._CCN_51___	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
5._CCN_51___	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
6._CCN_51___	AC	AA	AG	CG	CG	CT	AA	TT	AG	TT	AA	CC	CC	AA
7._CCN_51___	AC	AA	__	CG	CG	CT	AA	__	AG	TT	AA	CC	__	AA
8._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
9._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
10._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
11._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
12._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
13._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
14._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
15._CCN_51___	__	__	__	__	__	__	__	__	__	TT	AA	__	__	AA
16._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA
17._CCN_51___	__	__	AG	__	__	__	__	__	__	TT	AA	__	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	CT	CC
1._CCN_51___	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	CT	CC
2._CCN_51___	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	__	CC
3._CCN_51___	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	__	CC
4._CCN_51___	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	__	CC
5._CCN_51___	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	CT	CC
6._CCN_51___	TT	GG	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	__	CC
7._CCN_51___	TT	__	AG	CC	AC	AA	TT	GG	GT	AG	CC	AG	CT	CC
8._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
9._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
10._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
11._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
12._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
13._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
14._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
15._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
16._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__
17._CCN_51___	__	__	__	CC	__	AA	TT	__	__	AG	__	__	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
1._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
2._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
3._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
4._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
5._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
6._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
7._CCN_51___	GT	AT	CT	GG	AG	AG	CT	CC	GG	AG	GT	TT	CC	CT
8._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
9._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
10._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
11._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
12._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
13._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
14._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
15._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
16._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT
17._CCN_51___	__	__	CT	__	__	__	__	__	__	__	__	__	CC	CT

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
1._CCN_51___	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	__
2._CCN_51___	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
3._CCN_51___	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
4._CCN_51___	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
5._CCN_51___	GT	AG	__	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
6._CCN_51___	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
7._CCN_51___	GT	AG	CG	CT	TT	AA	GG	AG	AC	AA	TT	GG	GG	TT
8._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
9._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
10._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
11._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
12._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
13._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
14._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
15._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
16._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__
17._CCN_51___	__	__	CG	__	TT	AA	GG	__	AC	AA	TT	GG	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
1._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
2._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
3._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
4._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
5._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
6._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
7._CCN_51___	CG	AG	CT	AC	AG	CC	AA	AC	GG	CT	CC	CT	TT	CT
8._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
9._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
10._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
11._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
12._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
13._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
14._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
15._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	TT	CT
16._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	CT	CT
17._CCN_51___	__	AG	CT	__	__	__	__	AC	GG	__	__	CT	CT	CT

	85	86	87	88	89	90
_Input profile	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._CCN_51___	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._CCN_51___	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._CCN_51___	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CCN_51___	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CCN_51___	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CCN_51___	__	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CCN_51___	TT	AG	CC	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._CCN_51___	__	AG	__	CT	TT	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CCN_51 GC-07-019-1-21

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

1._CCN_51 GC-07-019-1-21

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

2._CCN_51 GC-07-019-1-21

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

3._CCN_51 GC-07-019-1-21

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

4._CCN_51 GC-07-019-1-21

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

5._CCN_51 GC-06-4-1-04

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

6._CCN_51 GC-07-019-1-21

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

7._CCN_51 GC-07-019-1-21

identical
83 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

8._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

9._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

10._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

11._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

12._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

13._CCN_51

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

14._CCN_51

identical
39 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

15._CCN_51

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

16._CCN_51

98.7 %
39 shared markers

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USAPEN

Dapeng Zhang, 2016

17._CCN_51

98.7 %
39 shared markers

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USASPC

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP497	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414