SNP Profiles matching BE 8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	CC	TT	GG	TT	CC	CC	CC	GG	CG	GG	TT	AG	CC
1._LCT_EEN_162_/S-1010___	CG	__	__	__	TT	__	CC	CC	__	CG	__	__	__	__
2._LCT_EEN_162_/S-1010___	CG	__	__	__	TT	__	CC	CC	__	CG	__	__	__	__
3._LCT_EEN_162_/S-1010___	CG	__	__	__	TT	__	CC	CC	CC	CG	__	__	__	__
4._LCT_EEN_162_/S-1010___	CG	__	__	__	TT	__	CC	CC	__	CG	__	__	__	__
5._LCT_EEN_162_/S-1010___	CG	CC	TT	GG	TT	__	__	CC	CC	CG	__	__	__	CC
6._LCT_EEN_162_/S-1010___	CG	CC	TT	GG	TT	__	__	CC	CC	CG	__	__	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26
_Input profile	AC	CG	CC	CC	AA	GG	AG	GG	AA	GG	CT	AA	X_X	X_X
1._LCT_EEN_162_/S-1010___	AC	CG	__	__	AA	__	AG	CC	AA	__	CT	AA	X_X	X_X
2._LCT_EEN_162_/S-1010___	AC	CG	__	__	AA	__	AG	CC	AA	__	CT	AA	X_X	X_X
3._LCT_EEN_162_/S-1010___	AC	CG	__	__	AA	__	AG	__	AA	__	CT	AA	X_X	X_X
4._LCT_EEN_162_/S-1010___	AC	CG	__	__	AA	__	AG	CC	AA	__	CT	AA	X_X	X_X
5._LCT_EEN_162_/S-1010___	AC	CG	CC	__	AA	GG	AG	CC	AA	GG	CT	AA	X_X	X_X
6._LCT_EEN_162_/S-1010___	AC	CG	CC	__	AA	GG	AG	CC	AA	GG	CT	AA	X_X	X_X

Input profile: LCT_EEN_62_/S-4 LCTEEN62/S

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

1._LCT_EEN_162_/S-1010 RUQ_70

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LCT_EEN_162_/S-1010 RUQ_686

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._LCT_EEN_162_/S-1010

92.3 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 60 T1

Dapeng Zhang, 2014

4._LCT_EEN_162_/S-1010

92.3 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A60 T1

Dapeng Zhang, 2016

5._LCT_EEN_162_/S-1010 RUQ_70

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._LCT_EEN_162_/S-1010 RUQ_686

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP1458	2	TcSNP1439	3	TcSNP1126	4	TcSNP1111	5	TcSNP1060
6	TcSNP1041	7	TcSNP994	8	TcSNP891	9	TcSNP878	10	TcSNP872
11	TcSNP860	12	TcSNP751	13	TcSNP606	14	TcSNP602	15	TcSNP591
16	TcSNP577	17	TcSNP448	18	TcSNP413	19	TcSNP372	20	TcSNP364
21	TcSNP230	22	TcSNP226	23	TcSNP193	24	TcSNP174	25	TcSNP151
26	TcSNP144

SNP Profiles matching BE 8

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Input profile: LCT_EEN_62_/S-4 LCTEEN62/S

1._LCT_EEN_162_/S-1010 RUQ_70

92.3 % 13 shared markers

2._LCT_EEN_162_/S-1010 RUQ_686

92.3 % 13 shared markers

3._LCT_EEN_162_/S-1010

92.3 % 13 shared markers

4._LCT_EEN_162_/S-1010

92.3 % 13 shared markers

5._LCT_EEN_162_/S-1010 RUQ_70

90 % 20 shared markers

6._LCT_EEN_162_/S-1010 RUQ_686

90 % 20 shared markers

92.3 %
13 shared markers

92.3 %
13 shared markers

92.3 %
13 shared markers

92.3 %
13 shared markers

90 %
20 shared markers

90 %
20 shared markers