SNP Profiles matching SC 1 [UNK]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAACCAAAGGGCCAAGGGGAAAACC
1._POUND_7_/B___
CCACAACCAAAGGGCCAAGGGGAAAACC
2._EET_272_[ECU]___
CCACAACCAAAGGGCCAAGGGGAAAACC
3._POUND_7___
CCACAACCAAAGGGCCAAGGGGAAAACC
4._POUND_7_/C___
CCACAACCAAAGGGCCAAGGGGAAAACC
5._LZ_8___
CCCCAACCAAGGGGCCAAGGGGAAAACC
6._GEBP_450_/A-F_[ADI]___
CCACAAACAAAGGGCCAAGGGGAAAACC
7._TRD_44___
CCACAACCAAGGGGCCAAGGGGAAAACC
8._ICS_39___
CCACAAACAAAGAGCCAAGGGGAAAACC
9._SCA_9___
CCACAAAAAAGGAGCCAAGGGGAAAAAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._POUND_7_/B___
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._EET_272_[ECU]___
AAAAAAAAAAGGAAGGACAAGGAACCAG
3._POUND_7___
AAAAAAAAAAGGAAGGACAAGGAACCAG
4._POUND_7_/C___
AAAAAAAAAAGGAAGGACAAGGAACCAG
5._LZ_8___
AAAAAAAAAAGGAAGGACAAGGAACCGG
6._GEBP_450_/A-F_[ADI]___
AAAAAAAAAAGGAAGGACAAGGAACCAG
7._TRD_44___
AAAAAAAAAAGGAAGGCCAAGGAACCAA
8._ICS_39___
AAAAAAAA__GGAAGGACAAGGAACCAG
9._SCA_9___
AAAAAAAG__GGAAGGACAAGGAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATGGAAGGAAGGAGGGCCTTTTAGGG
1._POUND_7_/B___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._EET_272_[ECU]___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
3._POUND_7___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
4._POUND_7_/C___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
5._LZ_8___
GGTTGGAAGGAAGGAGGGCCTTTTAGGG
6._GEBP_450_/A-F_[ADI]___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
7._TRD_44___
GGAAGGAAGGAAGGAAGGCCTTTTAGGG
8._ICS_39___
GGAAGGACGGAGGGAGGGCCTTTTGGGG
9._SCA_9___
GGATGGAACGAGGGAGGGCCTTATGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGAAGGAAAACCGGACGGGG
1._POUND_7_/B___
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._EET_272_[ECU]___
AAAGGGGGGGAAGGAAAACCGGACGGGG
3._POUND_7___
AAAGGGGGGGAAGGAAAACCGGACGGGG
4._POUND_7_/C___
AAAGGGGGGGAAGGAAAACCGGACGGGG
5._LZ_8___
AAAGGGGGGGAAGGAAAACCGGACGGGG
6._GEBP_450_/A-F_[ADI]___
AAGGGGGGGGAAGGAAAACCGGACGGGG
7._TRD_44___
AAAGGGGGGGAAGGAAAACCGGCCGGGG
8._ICS_39___
ATAAGGGGGGAAGGAAAACCAAACGGGG
9._SCA_9___
ATAGGGGGGGAAGGAAAACCAACCGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGAGAAAACCGGAAAACCAAACCC
1._POUND_7_/B___
AAGGGGAGAAAACCGGAAAACCAAACCC
2._EET_272_[ECU]___
AAGGGGAGAAAACCGGAAAACCAAACCC
3._POUND_7___
AAGGGGAGAAAACCGGAAAACCAAACCC
4._POUND_7_/C___
AAGGGGAGAAAACCGGAAAACCAAACCC
5._LZ_8___
AAGGGGAGAAAACCGGAAAACCAAACCC
6._GEBP_450_/A-F_[ADI]___
AAGGGGAGAAAACCGGAAAACCAACCCC
7._TRD_44___
AAGGGGAAAAAACCGGAAAACCAAACCC
8._ICS_39___
AAGGGGGGAAAACCGGAAAAACAAACCC
9._SCA_9___
AAGGGGAGAAAACCGGAAAAACAAACCC
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
1._POUND_7_/B___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._EET_272_[ECU]___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
3._POUND_7___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
4._POUND_7_/C___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
5._LZ_8___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
6._GEBP_450_/A-F_[ADI]___
GGCGAGGGGGCCGGGGGGAAAGGGX_XX_X
7._TRD_44___
GGGGGGGGGGCCGGGGGGAAAGAGX_XX_X
8._ICS_39___
GGGGGGGGGGCCAGGGGGATAAAGX_XX_X
9._SCA_9___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X

Input profile: EET_272_[ECU] RUQ_6

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._POUND_7_/B RUQ_24

identical
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_272_[ECU] MITC-000381

identical
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

3._POUND_7 MITC-000106

identical
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

4._POUND_7_/C Pound_7/C_Fld_6B_Fld#_176_Plt#_2

identical
82 shared markers

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USDA-TARS, United States of America
Location: Field: 176, Tree: 2
 Mars, 2018

5._LZ_8 RUQ_1231

97.6 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._GEBP_450_/A-F_[ADI] RUQ_1651

94.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._TRD_44 RUQ_1235

94.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._ICS_39 RUQ_1089

90.7 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._SCA_9 RUQ_1064

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998