SNP Profiles matching SC 1 [UNK]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAAACAAAGGGCCAAGGGGAAAACC
1._EET_272_[ECU]___
CCACAACCAAAGGGCCAAGGGGAAAACC
2._POUND_7_/B___
CCACAACCAAAGGGCCAAGGGGAAAACC
3._EET_272_[ECU]___
CCACAACCAAAGGGCCAAGGGGAAAACC
4._POUND_7___
CCACAACCAAAGGGCCAAGGGGAAAACC
5._POUND_7_/C___
CCACAACCAAAGGGCCAAGGGGAAAACC
6._CRU_100___
CCCCAACCAAGGGGCCAAGGGGAAAACC
7._POUND_2_/A___
CCCCAAAAAAGGAGCCAAGGGGAAAACC
8._POUND_26_/C___
CCCCAAACAAGGGGCCAAGGGGAAAACC
9._NA_149___
CCAAAAACAAGGGGCCAAGGGGAAAACC
10._LZ_8___
CCCCAACCAAGGGGCCAAGGGGAAAACC
11._NA_232___
CCACAAAAAAGGAGCCAAGGGGAAAACC
12._NA_710___
CCACAAAAAAGGGGCCAAGGGGAAAACC
13._NA_232___
CCACAAAAAAGGAGCCAAGGGGAAAACC
14._SPA_16_[COL]___
CCACAAACAAGGGGCCAAGGGGAAAACC
15._IMC_27___
CCACAAAAAAGGAGCCAAGGGGAAAACC
16._TRD_44___
CCACAACCAAGGGGCCAAGGGGAAAACC
17._SPA_16_[COL]___
CCACAAACAAGGGGCCAAGGGGAAAACC
18._CRU_70___
CCACAACCAAGGAGCCAAGGGGAAAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAAAGGAAGGACAAGGAACCAG
1._EET_272_[ECU]___
AAAAAAAAAAGGAAGGACAAGGAACCAG
2._POUND_7_/B___
AAAAAAAAAAGGAAGGACAAGGAACCAG
3._EET_272_[ECU]___
AAAAAAAAAAGGAAGGACAAGGAACCAG
4._POUND_7___
AAAAAAAAAAGGAAGGACAAGGAACCAG
5._POUND_7_/C___
AAAAAAAAAAGGAAGGACAAGGAACCAG
6._CRU_100___
AAAAAAAAAAGGAAGGCCAAGGAACCGG
7._POUND_2_/A___
AAAAAAAAAAGGAAGGCCAAGGAACCGG
8._POUND_26_/C___
AAAAAAAAACGGAAGGCCAACGAACCGG
9._NA_149___
AAAAAAAA__GGAAGGCCAACCAACCGG
10._LZ_8___
AAAAAAAAAAGGAAGGACAAGGAACCGG
11._NA_232___
AAAAAAAAACGGAAGGCCAAGGAACCGG
12._NA_710___
AAAAAAAAACGGAAGGCCAACGAACCGG
13._NA_232___
AAAAAAAAACGGAAGGCCAAGGAACCGG
14._SPA_16_[COL]___
AAACAAAA__GGAAGGACAACGAACC__
15._IMC_27___
AAAAAAAAACGGAAGGCCAACGAACCGG
16._TRD_44___
AAAAAAAAAAGGAAGGCCAAGGAACCAA
17._SPA_16_[COL]___
AAACAAAAACGGAAGGACAACGAACCAG
18._CRU_70___
AAAAAAAAACGGAAGGCCAACGAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
1._EET_272_[ECU]___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
2._POUND_7_/B___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
3._EET_272_[ECU]___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
4._POUND_7___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
5._POUND_7_/C___
GGATGGAAGGAAGGAGGGCCTTTTAGGG
6._CRU_100___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
7._POUND_2_/A___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
8._POUND_26_/C___
GGAAGGAAGGAGGGGGGGCCTTTTGGGG
9._NA_149___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
10._LZ_8___
GGTTGGAAGGAAGGAGGGCCTTTTAGGG
11._NA_232___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
12._NA_710___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
13._NA_232___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
14._SPA_16_[COL]___
GGAAGGACCGAAGGAGGGCCTTTTGGGG
15._IMC_27___
GGAAGGAAGGAGGGGGGGCCTTTTGGGG
16._TRD_44___
GGAAGGAAGGAAGGAAGGCCTTTTAGGG
17._SPA_16_[COL]___
GGAAGGACCGAAGGAGGGCCTTTTGGGG
18._CRU_70___
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGGGGGGGAAGGAAAACCGGACGGGG
1._EET_272_[ECU]___
AAAGGGGGGGAAGGAAAACCGGACGGGG
2._POUND_7_/B___
AAAGGGGGGGAAGGAAAACCGGACGGGG
3._EET_272_[ECU]___
AAAGGGGGGGAAGGAAAACCGGACGGGG
4._POUND_7___
AAAGGGGGGGAAGGAAAACCGGACGGGG
5._POUND_7_/C___
AAAGGGGGGGAAGGAAAACCGGACGGGG
6._CRU_100___
AAGGGGGGGGAAGGAAAACCAGCCGGGG
7._POUND_2_/A___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
8._POUND_26_/C___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
9._NA_149___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
10._LZ_8___
AAAGGGGGGGAAGGAAAACCGGACGGGG
11._NA_232___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
12._NA_710___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
13._NA_232___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
14._SPA_16_[COL]___
AAGGAGGGGGAAGGAAAACCGGCCGGGG
15._IMC_27___
AAGGGGGGGGAAGGAAAACCGGCCGGGG
16._TRD_44___
AAAGGGGGGGAAGGAAAACCGGCCGGGG
17._SPA_16_[COL]___
AAGGAGGGGGAAGGAAAACCGGCCGGGG
18._CRU_70___
AAAAGGGGGGAAGGAAAACCAACCGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGAGAAAACCGGAAAACCAACCCC
1._EET_272_[ECU]___
AAGGGGAGAAAACCGGAAAACCAAACCC
2._POUND_7_/B___
AAGGGGAGAAAACCGGAAAACCAAACCC
3._EET_272_[ECU]___
AAGGGGAGAAAACCGGAAAACCAAACCC
4._POUND_7___
AAGGGGAGAAAACCGGAAAACCAAACCC
5._POUND_7_/C___
AAGGGGAGAAAACCGGAAAACCAAACCC
6._CRU_100___
AAGGGGGGAAAACCGGAAAACCAACCCC
7._POUND_2_/A___
AAGGGGGGAAAACCGGAAAACCAACCCC
8._POUND_26_/C___
AAGGGGGGAAAACCGGAAAACCAACCCC
9._NA_149___
AAGGGGGGAAAACCGGAAAACCAACCCC
10._LZ_8___
AAGGGGAGAAAACCGGAAAACCAAACCC
11._NA_232___
AAGGGGGGAAAACCGGAAAACCAAACCC
12._NA_710___
AAGGGGGGAAAACCGGAAAACCAAACCC
13._NA_232___
AAGGGGGGAAAACCGGAAAACCAAACCC
14._SPA_16_[COL]___
AAGGGGGGAAAACCGGAAAACCAACCCG
15._IMC_27___
AAGGGGGGAAAACCGGAAAACCAACCCC
16._TRD_44___
AAGGGGAAAAAACCGGAAAACCAAACCC
17._SPA_16_[COL]___
AAGGGGGGAAAACCGGAAAACCAACCCG
18._CRU_70___
AAGGGGGGAAAACCGGAAAACCAACCCC
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCGAGGGGGCCGGGGGGAAAGGGX_XX_X
1._EET_272_[ECU]___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
2._POUND_7_/B___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
3._EET_272_[ECU]___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
4._POUND_7___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
5._POUND_7_/C___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
6._CRU_100___
GGCGGGGGGGCCGGGGGGAAAAGGX_XX_X
7._POUND_2_/A___
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
8._POUND_26_/C___
GGCGGGGGGGCCGGGGGGAAAAGGX_XX_X
9._NA_149___
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
10._LZ_8___
GGGGAGGGGGCCAGGGGGAAAGAGX_XX_X
11._NA_232___
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
12._NA_710___
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
13._NA_232___
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
14._SPA_16_[COL]___
GGCGGGGGGGCCGGGGGGAAAAAGX_XX_X
15._IMC_27___
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
16._TRD_44___
GGGGGGGGGGCCGGGGGGAAAGAGX_XX_X
17._SPA_16_[COL]___
GGCGGGGGGGCCGGGGGGAAAAAGX_XX_X
18._CRU_70___
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X

Input profile: GEBP_450_/A-F_[ADI] RUQ_1651

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._EET_272_[ECU] RUQ_6

94.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._POUND_7_/B RUQ_24

94.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._EET_272_[ECU] MITC-000381

94.5 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

4._POUND_7 MITC-000106

94.5 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

5._POUND_7_/C Pound_7/C_Fld_6B_Fld#_176_Plt#_2

94.5 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 176, Tree: 2
 Mars, 2018

6._CRU_100 RUQ_877

93.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._POUND_2_/A GC-01-93-5-10

93.3 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 10, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._POUND_26_/C MITC-000373

93.3 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

9._NA_149 RUQ_801

93.2 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._LZ_8 RUQ_1231

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._NA_232 RUQ_1504

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._NA_710 RUQ_1588

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

13._NA_232 MITC-000043

92.1 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

14._SPA_16_[COL] RUQ_691

91.9 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._IMC_27 RUQ_515

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._TRD_44 RUQ_1235

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._SPA_16_[COL] SPA_16_[COL]_Fld#_178_Plt#_2

91.5 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 178, Tree: 2
 Mars, 2018

18._CRU_70 RUQ_897

90.2 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998