SNP Profiles matching NACIONAL

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
1._DOM_30___	CC	AC	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
2._NACIONAL___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	AC
3._FSC_13___	CC	AA	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
4._GDL_3___	CC	AA	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
5._MATINA_1_/6___	CC	AA	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
6._MATINA_1_/6___	CC	AA	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
7._MAR_9___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
8._BE_10___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
9._B_12_/2_[POU]___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
10._SC_9_[UNK]___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
11._AMELONADO_[VAR]___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
12._LCT_EEN_46___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
13._UF_273___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
14._AMELONADO_[VAR]___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
15._SIAL_42___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
16._GU_207___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	GG	AA	AA	CC
17._SIAL_88___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC
18._SIAL_70___	CC	CC	AA	AA	AA	GG	AA	CC	AA	GG	AG	AA	AA	CC
19._JA_9_/37_[POU]___	CC	AA	AA	AA	AA	GG	AA	CC	AA	GG	AA	AA	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
1._DOM_30___	AA	AA	GG	AG	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
2._NACIONAL___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
3._FSC_13___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
4._GDL_3___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
5._MATINA_1_/6___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
6._MATINA_1_/6___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
7._MAR_9___	AG	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
8._BE_10___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
9._B_12_/2_[POU]___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
10._SC_9_[UNK]___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
11._AMELONADO_[VAR]___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
12._LCT_EEN_46___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
13._UF_273___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
14._AMELONADO_[VAR]___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
15._SIAL_42___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
16._GU_207___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
17._SIAL_88___	AG	AA	GG	AA	AA	GG	AA	AA	AA	GG	CC	AA	AA	GG
18._SIAL_70___	AA	AA	GG	AA	AA	GG	AA	AA	CC	GG	CC	AA	AA	GG
19._JA_9_/37_[POU]___	GG	AA	GG	AA	__	GG	AA	AA	CC	GG	CC	AA	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	AG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
1._DOM_30___	AA	TT	AG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
2._NACIONAL___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
3._FSC_13___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
4._GDL_3___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
5._MATINA_1_/6___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
6._MATINA_1_/6___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
7._MAR_9___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
8._BE_10___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
9._B_12_/2_[POU]___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
10._SC_9_[UNK]___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
11._AMELONADO_[VAR]___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
12._LCT_EEN_46___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
13._UF_273___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
14._AMELONADO_[VAR]___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
15._SIAL_42___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
16._GU_207___	AA	TT	GG	AA	GG	AA	GG	GG	GG	__	TT	TT	GG	GG
17._SIAL_88___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
18._SIAL_70___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG
19._JA_9_/37_[POU]___	AA	TT	GG	AA	GG	AA	GG	GG	GG	CC	TT	TT	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	GG
1._DOM_30___	AA	AA	GG	GG	GG	AT	GG	AA	CC	CC	GG	AA	AA	GG
2._NACIONAL___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
3._FSC_13___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	GG
4._GDL_3___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	GG
5._MATINA_1_/6___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
6._MATINA_1_/6___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
7._MAR_9___	AA	AA	GG	GG	GG	AA	GG	AA	CC	CC	GG	AA	AA	GG
8._BE_10___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
9._B_12_/2_[POU]___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
10._SC_9_[UNK]___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
11._AMELONADO_[VAR]___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
12._LCT_EEN_46___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
13._UF_273___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
14._AMELONADO_[VAR]___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
15._SIAL_42___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
16._GU_207___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
17._SIAL_88___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC
18._SIAL_70___	AA	AA	GG	GG	GG	TT	GG	GG	CC	CC	GG	AA	AA	CC
19._JA_9_/37_[POU]___	AA	AA	GG	GG	GG	TT	GG	AA	CC	CC	GG	AA	AA	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AA	AG	GG	AA	GG	AA	CC	GG	AA	AA	AA	AA	CC	CC
1._DOM_30___	AA	GG	GG	AA	GG	AA	CC	GG	AA	CC	AA	AA	AC	CC
2._NACIONAL___	AA	GG	GG	AA	GG	AA	CC	GG	AA	AA	AA	AA	CC	CC
3._FSC_13___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
4._GDL_3___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
5._MATINA_1_/6___	AA	GG	GG	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
6._MATINA_1_/6___	AA	GG	GG	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
7._MAR_9___	AA	GG	GG	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
8._BE_10___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
9._B_12_/2_[POU]___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
10._SC_9_[UNK]___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
11._AMELONADO_[VAR]___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
12._LCT_EEN_46___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
13._UF_273___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
14._AMELONADO_[VAR]___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
15._SIAL_42___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
16._GU_207___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
17._SIAL_88___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
18._SIAL_70___	AC	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC
19._JA_9_/37_[POU]___	AA	GG	AA	AA	GG	AA	CC	GG	AA	AA	AA	AA	AA	CC

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	CG	GG	GG	AA	CC	AA	GG	GG	AA	AA	AA	X_X	X_X
1._DOM_30___	GG	CC	GG	GG	AG	AC	AA	GG	GG	AA	AA	AA	X_X	X_X
2._NACIONAL___	GG	CC	GG	GG	GG	CC	AA	GG	GG	AA	AA	AA	X_X	X_X
3._FSC_13___	GG	CC	GG	GG	GG	CC	AA	GG	GG	AA	AA	AA	X_X	X_X
4._GDL_3___	GG	CC	GG	GG	GG	CC	AA	GG	GG	AA	AA	AA	X_X	X_X
5._MATINA_1_/6___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
6._MATINA_1_/6___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
7._MAR_9___	GG	CC	GG	GG	GG	CC	AA	GG	GG	AA	AA	AA	X_X	X_X
8._BE_10___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
9._B_12_/2_[POU]___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
10._SC_9_[UNK]___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
11._AMELONADO_[VAR]___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
12._LCT_EEN_46___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
13._UF_273___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
14._AMELONADO_[VAR]___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
15._SIAL_42___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
16._GU_207___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
17._SIAL_88___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
18._SIAL_70___	GG	CC	GG	GG	AA	CC	AA	GG	GG	AA	AA	GG	X_X	X_X
19._JA_9_/37_[POU]___	GG	CC	GG	GG	AA	CC	AA	CC	GG	AA	AA	GG	X_X	X_X

Input profile: GS_13 RUQ_683

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

1._DOM_30 RUQ_549

94.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

2._NACIONAL NACIONAL_Fld#_189_Plt#_5

94.5 %
82 shared markers

View Any

USDA-TARS, United States of America

Location: Field: 189, Tree: 5

Notes: TARS_Cacao_collection

Mars, 2018

3._FSC_13 RUQ_1535

93.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

4._GDL_3 RUQ_553

93.9 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

5._MATINA_1_/6 RUQ_1715

93.9 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

6._MATINA_1_/6 MITC-000114

93.9 %
82 shared markers

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USDA-SHRS, United States of America

Mars, 2018

7._MAR_9 RUQ_557

93.3 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

8._BE_10 GC-08-90-2-13

91.5 %
82 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership - Sample

Mars, 2018

9._B_12_/2_[POU] RUQ_436

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

10._SC_9_[UNK] RUQ_44

91.5 %
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

11._AMELONADO_[VAR] MITC-000366

91.5 %
82 shared markers

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USDA-SHRS, United States of America

Mars, 2018

12._LCT_EEN_46 MITC-000412

91.5 %
82 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Mars, 2018

13._UF_273 MITC-000717

91.5 %
82 shared markers

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USDA-SHRS, United States of America

Mars, 2018

14._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

91.5 %
82 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 14, Tree: 5

Notes: TARS_Cacao_collection

Mars, 2018

15._SIAL_42 SIAL_42_Fld#_146_Plt#_6

91.5 %
82 shared markers

View Any

USDA-TARS, United States of America

Location: Field: 146, Tree: 6

Notes: TARS_Cacao_collection

Mars, 2018

16._GU_207 GC-01-56-3-11

91.4 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 3, Rep: 11, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

17._SIAL_88 GC-01-52-3-7

90.9 %
82 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 3, Rep: 7, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

18._SIAL_70 GC-01-39-2-16

90.2 %
82 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 12, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

19._JA_9_/37_[POU] GC-08-71-1-93

90.1 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 93, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

Mars, 2018

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998

SNP Profiles matching NACIONAL

Show/Hide Profiles

Input profile: GS_13 RUQ_683

1._DOM_30 RUQ_549

94.5 % 82 shared markers

2._NACIONAL NACIONAL_Fld#_189_Plt#_5

94.5 % 82 shared markers

3._FSC_13 RUQ_1535

93.9 % 82 shared markers

4._GDL_3 RUQ_553

93.9 % 82 shared markers

5._MATINA_1_/6 RUQ_1715

93.9 % 82 shared markers

6._MATINA_1_/6 MITC-000114

93.9 % 82 shared markers

7._MAR_9 RUQ_557

93.3 % 82 shared markers

8._BE_10 GC-08-90-2-13

91.5 % 82 shared markers

9._B_12_/2_[POU] RUQ_436

91.5 % 82 shared markers

10._SC_9_[UNK] RUQ_44

91.5 % 82 shared markers

11._AMELONADO_[VAR] MITC-000366

91.5 % 82 shared markers

12._LCT_EEN_46 MITC-000412

91.5 % 82 shared markers

13._UF_273 MITC-000717

91.5 % 82 shared markers

14._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

91.5 % 82 shared markers

15._SIAL_42 SIAL_42_Fld#_146_Plt#_6

91.5 % 82 shared markers

16._GU_207 GC-01-56-3-11

91.4 % 81 shared markers

17._SIAL_88 GC-01-52-3-7

90.9 % 82 shared markers

18._SIAL_70 GC-01-39-2-16

90.2 % 82 shared markers

19._JA_9_/37_[POU] GC-08-71-1-93

90.1 % 81 shared markers

94.5 %
82 shared markers

94.5 %
82 shared markers

93.9 %
82 shared markers

93.9 %
82 shared markers

93.9 %
82 shared markers

93.9 %
82 shared markers

93.3 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.5 %
82 shared markers

91.4 %
81 shared markers

90.9 %
82 shared markers

90.2 %
82 shared markers

90.1 %
81 shared markers