SNP Profiles matching IMC 16

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACAAAAACAAAGGGCCAAGGGGAAGGCC
1._IMC_78___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
2._IMC_20___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
3._IMC_20___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
4._IMC_54___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
5._IMC_31___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
6._IMC_31___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
7._EET_233_[ECU]___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
8._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
9._IMC_11___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
10._IMC_14___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
11._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
12._IMC_11___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
13._IMC_14___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
14._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
15._IMC_11___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
16._IMC_11___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
17._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
18._EET_233_[ECU]___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
19._IMC_55___
ACAAAAACAAAGGGCCAAGGGGAAAACC
20._IMC_71___
ACAAAAACAAGGGGCCAAGGGGAAGGCC
21._IMC_85___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
22._IMC_50___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGCCGGAGGGCCAACGAGACAG
1._IMC_78___
AAAAAAAGCCGGAAGGCCAACCAGACGG
2._IMC_20___
AAAAAAAGCCGGAGGGACAACCAGACAG
3._IMC_20___
AAAAAAAGCCGGAGGGACAACCAGACAG
4._IMC_54___
AAAAAAAGCCGGAAGGCCAACGAGACAG
5._IMC_31___
AAAAAAAGCCGGAGGGACAACCAGAAAG
6._IMC_31___
AAAAAAAGCCGGAGGGACAACCAGAAAG
7._EET_233_[ECU]___
AAACAAAACCGGAGGGCCAACCAGACAG
8._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
9._IMC_11___
AAAAAAAACCGGAAGGACAACGAGACAG
10._IMC_14___
AAAAAAAACCGGAAGGACAACGAGACAG
11._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
12._IMC_11___
AAAAAAAACCGGAAGGACAACGAGACAG
13._IMC_14___
AAAAAAAACCGGAAGGACAACGAGACAG
14._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
15._IMC_11___
AAAAAAAACCGGAAGGACAACGAGACAG
16._IMC_11___
AAAAAAAACCGGAAGGACAACGAGACAG
17._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
18._EET_233_[ECU]___
AAACAAAACCGGAGGGCCAACCAGACAG
19._IMC_55___
AAAAAAAACCGGAAGGACAACGAGAAAG
20._IMC_71___
AAAAAAAGCCGGAAGGACAACCAGACAG
21._IMC_85___
AAACAAAACCGGAGGGACAACCAGACAG
22._IMC_50___
AAAAAAAACCGGAGGGCCAACCAGAAAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATGGACCGAGGGAGGGCCTTTTAAGG
1._IMC_78___
GGAAGGACCGAGGGAAGGCCTTTTAAGG
2._IMC_20___
GGATGGACCGAGGGAGGGCCTTTTGGGG
3._IMC_20___
GGATGGACCGAGGGAGGGCCTTTTGGGG
4._IMC_54___
GGAAGGACGGAGGGAAGGCCTTTTAGGG
5._IMC_31___
GGATGGACCGAGGGAGGGCCTTTTAGGG
6._IMC_31___
GGATGGACCGAGGGAGGGCCTTTTAGGG
7._EET_233_[ECU]___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
8._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
9._IMC_11___
GGATGGACCGAGGGAAGGCCTTTTAGGG
10._IMC_14___
GGATGGACCGAGGGAAGGCCTTTTAGGG
11._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
12._IMC_11___
GGATGGACCGAGGGAAGGCCTTTTAGGG
13._IMC_14___
GGATGGACCGAGGGAAGGCCTTTTAGGG
14._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
15._IMC_11___
GGATGGACCGAGGGAAGGCCTTTTAGGG
16._IMC_11___
GGATGGACCGAGGGAAGGCCTTTTAGGG
17._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
18._EET_233_[ECU]___
GGAAGGACCGAGGGAGGG__TTTTAAGG
19._IMC_55___
GGAAGGACGGAGGGAAGGCCTTTTAGGG
20._IMC_71___
GGAAGGACGGAGGGAAGGCCTTTTAGGG
21._IMC_85___
GGATGGACCGAGGGAGGGCCTTTTAGGG
22._IMC_50___
GGAAGGACCCAGGGAGGGCCTTTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGATGGGGAACCAGACGGGG
1._IMC_78___
AAAGGGGGGGATGGGGAAACAGACGGCG
2._IMC_20___
AAAGAGGGGGATGGAGAAACAGCCGGCG
3._IMC_20___
AAAGAGGGGGATGGAGAAACAGCCGGCG
4._IMC_54___
AAGGGGGGGGATGGAGAACCAGACGGGG
5._IMC_31___
AAGGAGGGGGATGGGGAAACAGACGGCG
6._IMC_31___
AAGGAGGGGGATGGGGAAACAGACGGCG
7._EET_233_[ECU]___
AAAGGGGGGGATGGGGAAACAGACGGCG
8._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
9._IMC_11___
AAGGAGGGGGATGGAGAACCAGCCGGGG
10._IMC_14___
AAGGAGGGGGATGGAGAACCAGCCGGGG
11._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
12._IMC_11___
AAGGAGGGGGATGGAGAACCAGCCGGGG
13._IMC_14___
AAGGAGGGGGATGGAGAACCAGCCGGGG
14._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
15._IMC_11___
AAGGAGGGGGATGGAGAACCAGCCGGGG
16._IMC_11___
AAGGAGGGGGATGGAGAACCAGCCGGGG
17._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
18._EET_233_[ECU]___
AAAGGGGGGGATGGGGAAACAGACGGCG
19._IMC_55___
AAAGGGGGGGATGGAGAACCAGCCGGGG
20._IMC_71___
AAAGAGGGGGATGGGGAAACAGCCGGGG
21._IMC_85___
AAAGAGGGGGATGGAGAACCAGCCGGCG
22._IMC_50___
AAAGAGGGGGATGGAGAAACAGACGGCG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGAGGGAAAACCGGAAAAACAAACCG
1._IMC_78___
ACGGAGGGAAAACCGGAAAAACAAACCC
2._IMC_20___
ACGGAGGGAAAACCGGAAAAACAACCCG
3._IMC_20___
ACGGAGGGAAAACCGGAAAAACAACCCG
4._IMC_54___
AAGGGGGGAAAACCGGAAAAAAAAACCC
5._IMC_31___
ACGGGGGGAAAACCGGAAAAAAAAACCC
6._IMC_31___
ACGGGGGGAAAACCGGAAAAAAAAACCC
7._EET_233_[ECU]___
ACGGGGGGAAAACCGGAAAAACAACCCG
8._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
9._IMC_11___
AAGGGGGGAAAACCGGAAAAAAAAACCG
10._IMC_14___
AAGGGGGGAAAACCGGAAAAAAAAACCG
11._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
12._IMC_11___
AAGGGGGGAAAACCGGAAAAAAAAACCG
13._IMC_14___
AAGGGGGGAAAACCGGAAAAAAAAACCG
14._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
15._IMC_11___
AAGGGGGGAAAACCGGAAAAAAAAACCG
16._IMC_11___
AAGGGGGGAAAACCGGAAAAAAAAACCG
17._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
18._EET_233_[ECU]___
ACGGGGGGAAAACCGGAAAAACAACCCG
19._IMC_55___
AAGGAGGGAAAACCGGAAAAAAAAAACC
20._IMC_71___
ACGGAGGGAAAACCGGAAAAAAAAACCG
21._IMC_85___
ACGGGGGGAAAACCGGAAAAAAAACCCC
22._IMC_50___
ACGGAGGGAAAACCGGAAAAACAAACCG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
1._IMC_78___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
2._IMC_20___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
3._IMC_20___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
4._IMC_54___
GGGGAGGGGGCCGGGGGGATAAAAX_XX_X
5._IMC_31___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
6._IMC_31___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
7._EET_233_[ECU]___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
8._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
9._IMC_11___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
10._IMC_14___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
11._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
12._IMC_11___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
13._IMC_14___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
14._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
15._IMC_11___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
16._IMC_11___
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
17._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
18._EET_233_[ECU]___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
19._IMC_55___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
20._IMC_71___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
21._IMC_85___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
22._IMC_50___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X

Input profile: IMC_16 RUQ_861

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._IMC_78 RUQ_1678

93.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._IMC_20 RUQ_985

93.3 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._IMC_20 MITC-000417

93.3 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

4._IMC_54 GC-04-18-1-18

92.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 1, Rep: 18, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._IMC_31 RUQ_1449

92.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._IMC_31 MITC-000001

92.7 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

7._EET_233_[ECU] GC-05-149-4-2

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 27, Tree: 2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

8._IMC_67 GC-05-82-2-33

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

9._IMC_11 GC-04-29-2-11

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 11, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._IMC_14 GC-03-30-3-9

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._IMC_67 GC-05-82-2-33

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

12._IMC_11 RUQ_8

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

13._IMC_14 RUQ_1634

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._IMC_67 RUQ_1056

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._IMC_11 MITC-000647

92.1 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

16._IMC_11 IMC_11_Fld#_165_Plt#_2

92.1 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 165, Tree: 2
 Mars, 2018

17._IMC_67 IMC_67_Fld#_152A_Plt#_1

92.1 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

18._EET_233_[ECU] GC-05-149-4-2

92 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 27, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._IMC_55 RUQ_836

90.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._IMC_71 RUQ_734

90.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._IMC_85 RUQ_1666

90.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_50 RUQ_1590

90.2 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998