SNP Profiles matching POUND 18

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACAAAAACAAAGGGCCAAGGGGAAGGCC
1._IMC_16___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
2._EET_233_[ECU]___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
3._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
4._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
5._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
6._IMC_71___
ACAAAAACAAGGGGCCAAGGGGAAGGCC
7._IMC_67___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
8._EET_233_[ECU]___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
9._IMC_31___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
10._IMC_31___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
11._IMC_20___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
12._IMC_20___
ACAAAAACAAAGGGCCAAGGGGAAGGCC
13._IMC_54___
ACAAAAACAAAGGGCCAAGGGGAAAGCC
14._IMC_50___
ACAAAAACAAGGGGCCAAGGGGAAAGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGCCGGAAGGCCAACCAGACGG
1._IMC_16___
AAAAAAAGCCGGAGGGCCAACGAGACAG
2._EET_233_[ECU]___
AAACAAAACCGGAGGGCCAACCAGACAG
3._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
4._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
5._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
6._IMC_71___
AAAAAAAGCCGGAAGGACAACCAGACAG
7._IMC_67___
AAACAAAACCGGAGGGCCAACCAGACAG
8._EET_233_[ECU]___
AAACAAAACCGGAGGGCCAACCAGACAG
9._IMC_31___
AAAAAAAGCCGGAGGGACAACCAGAAAG
10._IMC_31___
AAAAAAAGCCGGAGGGACAACCAGAAAG
11._IMC_20___
AAAAAAAGCCGGAGGGACAACCAGACAG
12._IMC_20___
AAAAAAAGCCGGAGGGACAACCAGACAG
13._IMC_54___
AAAAAAAGCCGGAAGGCCAACGAGACAG
14._IMC_50___
AAAAAAAACCGGAGGGCCAACCAGAAAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGACCGAGGGAAGGCCTTTTAAGG
1._IMC_16___
GGATGGACCGAGGGAGGGCCTTTTAAGG
2._EET_233_[ECU]___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
3._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
4._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
5._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
6._IMC_71___
GGAAGGACGGAGGGAAGGCCTTTTAGGG
7._IMC_67___
GGAAGGACCGAGGGAGGGCCTTTTAAGG
8._EET_233_[ECU]___
GGAAGGACCGAGGGAGGG__TTTTAAGG
9._IMC_31___
GGATGGACCGAGGGAGGGCCTTTTAGGG
10._IMC_31___
GGATGGACCGAGGGAGGGCCTTTTAGGG
11._IMC_20___
GGATGGACCGAGGGAGGGCCTTTTGGGG
12._IMC_20___
GGATGGACCGAGGGAGGGCCTTTTGGGG
13._IMC_54___
GGAAGGACGGAGGGAAGGCCTTTTAGGG
14._IMC_50___
GGAAGGACCCAGGGAGGGCCTTTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGATGGGGAAACAGACGGCG
1._IMC_16___
AAAGGGGGGGATGGGGAACCAGACGGGG
2._EET_233_[ECU]___
AAAGGGGGGGATGGGGAAACAGACGGCG
3._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
4._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
5._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
6._IMC_71___
AAAGAGGGGGATGGGGAAACAGCCGGGG
7._IMC_67___
AAAGGGGGGGATGGGGAAACAGACGGCG
8._EET_233_[ECU]___
AAAGGGGGGGATGGGGAAACAGACGGCG
9._IMC_31___
AAGGAGGGGGATGGGGAAACAGACGGCG
10._IMC_31___
AAGGAGGGGGATGGGGAAACAGACGGCG
11._IMC_20___
AAAGAGGGGGATGGAGAAACAGCCGGCG
12._IMC_20___
AAAGAGGGGGATGGAGAAACAGCCGGCG
13._IMC_54___
AAGGGGGGGGATGGAGAACCAGACGGGG
14._IMC_50___
AAAGAGGGGGATGGAGAAACAGACGGCG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGAGGGAAAACCGGAAAAACAAACCC
1._IMC_16___
AAGGAGGGAAAACCGGAAAAACAAACCG
2._EET_233_[ECU]___
ACGGGGGGAAAACCGGAAAAACAACCCG
3._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
4._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
5._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
6._IMC_71___
ACGGAGGGAAAACCGGAAAAAAAAACCG
7._IMC_67___
ACGGGGGGAAAACCGGAAAAACAACCCG
8._EET_233_[ECU]___
ACGGGGGGAAAACCGGAAAAACAACCCG
9._IMC_31___
ACGGGGGGAAAACCGGAAAAAAAAACCC
10._IMC_31___
ACGGGGGGAAAACCGGAAAAAAAAACCC
11._IMC_20___
ACGGAGGGAAAACCGGAAAAACAACCCG
12._IMC_20___
ACGGAGGGAAAACCGGAAAAACAACCCG
13._IMC_54___
AAGGGGGGAAAACCGGAAAAAAAAACCC
14._IMC_50___
ACGGAGGGAAAACCGGAAAAACAAACCG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
1._IMC_16___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
2._EET_233_[ECU]___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
3._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
4._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
5._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
6._IMC_71___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
7._IMC_67___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
8._EET_233_[ECU]___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X
9._IMC_31___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
10._IMC_31___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
11._IMC_20___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
12._IMC_20___
GGGGGGGGGGCCGGGGGGATAAAAX_XX_X
13._IMC_54___
GGGGAGGGGGCCGGGGGGATAAAAX_XX_X
14._IMC_50___
GGGGAGGGGGCCGGGGGGAAAAAAX_XX_X

Input profile: IMC_78 RUQ_1678

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._IMC_16 RUQ_861

93.9 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._EET_233_[ECU] GC-05-149-4-2

93.3 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 27, Tree: 2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

3._IMC_67 GC-05-82-2-33

93.3 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

4._IMC_67 GC-05-82-2-33

93.3 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._IMC_67 RUQ_1056

93.3 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._IMC_71 RUQ_734

93.3 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._IMC_67 IMC_67_Fld#_152A_Plt#_1

93.3 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

8._EET_233_[ECU] GC-05-149-4-2

93.2 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 27, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._IMC_31 RUQ_1449

92.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._IMC_31 MITC-000001

92.7 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

11._IMC_20 RUQ_985

92.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._IMC_20 MITC-000417

92.1 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

13._IMC_54 GC-04-18-1-18

91.5 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 1, Rep: 18, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._IMC_50 RUQ_1590

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998