SNP Profiles matching SIAL 98

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAAAAAAGGAAACAAGGGGAAAACC
1._BE_10___
CCCCAAAAAAGGAACCAAGGGGAAAACC
2._B_12_/2_[POU]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
3._SC_9_[UNK]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
4._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
5._LCT_EEN_46___
CCCCAAAAAAGGAACCAAGGGGAAAACC
6._UF_273___
CCCCAAAAAAGGAACCAAGGGGAAAACC
7._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
8._SIAL_42___
CCCCAAAAAAGGAACCAAGGGGAAAACC
9._GU_207___
CCCCAAAAAAGGAACCAAGGGGAAAACC
10._SIAL_70___
CCCCAAAAAAGGAACCAAGGAGAAAACC
11._CC_37___
CCCCAAAAAAGGAACCAAGGGGAAAACC
12._SIC_7___
CCCCAAAAAAGGAACCAAGGGGAAAACC
13._SIAL_88___
CCCCAAAAAAGGAACCAAGGAAAAAACC
14._SIC_628___
CCCCAAAAAAGGAACCAAGGAAAAAACC
15._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
16._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
17._SIAL_98___
CCCCAAAAAAGGAACCAAGGAAAAAACC
18._SIC_1___
CCAAAAAAAAGGAACCAAGGGGAAAACC
19._SIC_2___
CCAAAAAAAAGGAACCAAGGGGAAAACC
20._EEG_27___
CCAAAAAAAAGGAACCAAGGAAAAAGCC
21._JA_9_/37_[POU]___
CCAAAAAAAAGGAACCAAGGAAAAAACC
22._SIAL_169___
CCACAAAAAAGGAACCAAGGAAAAAACC
23._SIAL_505___
CCACAAAAAAGGAACCAAGGAAAAAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGAAAAGGAAAAACGGCCAAAAGG
1._BE_10___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
2._B_12_/2_[POU]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
3._SC_9_[UNK]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
4._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
5._LCT_EEN_46___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
6._UF_273___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
7._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
8._SIAL_42___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
9._GU_207___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
10._SIAL_70___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
11._CC_37___
AGAAGGAAACGGAAAAACGGCCAAAAGG
12._SIC_7___
AGAAGGAAACGGAAAAACGGCCAAAAGG
13._SIAL_88___
AGAAGGAAAAGGAAAAAAGGCCAAAAGG
14._SIC_628___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
15._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
16._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
17._SIAL_98___
AAAAAAAAAAGGAAAACCGGCCAAAAGG
18._SIC_1___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
19._SIC_2___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
20._EEG_27___
AGAAGGAA__GGAAAAACAGCCAAAAGG
21._JA_9_/37_[POU]___
GGAAGGAA__GGAAAACCGGCCAAAAGG
22._SIAL_169___
AGAAGGAAAAGGAAAAACGGCCAGAAGG
23._SIAL_505___
AGAAGGAAAAGGAAAAACGGCCAGAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._BE_10___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
2._B_12_/2_[POU]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
3._SC_9_[UNK]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
4._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
5._LCT_EEN_46___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
6._UF_273___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
7._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
8._SIAL_42___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
9._GU_207___
AATTGGAAGGAAGGGGGG__TTTTGGGG
10._SIAL_70___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
11._CC_37___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
12._SIC_7___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
13._SIAL_88___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
14._SIC_628___
AATTGGAAGGAAGGGGGG__TTTTGGGG
15._MATINA_1_/6___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
16._MATINA_1_/6___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
17._SIAL_98___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
18._SIC_1___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
19._SIC_2___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
20._EEG_27___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
21._JA_9_/37_[POU]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
22._SIAL_169___
AATTGGAAGGAAGGGGGGCCTT__GGGG
23._SIAL_505___
AATTGGAAGGAAGGGGGG__TTTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGATGGAACCCCGGAAAACC
1._BE_10___
AAAAGGGGGGTTGGAACCCCGGAAAACC
2._B_12_/2_[POU]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
3._SC_9_[UNK]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
4._AMELONADO_[VAR]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
5._LCT_EEN_46___
AAAAGGGGGGTTGGAACCCCGGAAAACC
6._UF_273___
AAAAGGGGGGTTGGAACCCCGGAAAACC
7._AMELONADO_[VAR]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
8._SIAL_42___
AAAAGGGGGGTTGGAACCCCGGAAAACC
9._GU_207___
AAAAGGGGGGTTGGAACCCCGGAAAACC
10._SIAL_70___
AAAAGGGGGGTTGGGGCCCCGGAAAACC
11._CC_37___
AAAGGGGGGGTTGGAACCCCGGAAAACC
12._SIC_7___
AAAGGGGGGGTTGGAACCCCGGAAAACC
13._SIAL_88___
AAAAGGGGGGTTGGAACCCCGGAAAACC
14._SIC_628___
AAAAGGGGGGTTGGAACCCCGGAAAACC
15._MATINA_1_/6___
AAAAGGGGGGTTGGAACCCCGGAAAACC
16._MATINA_1_/6___
AAAAGGGGGGTTGGAACCCCGGAAAACC
17._SIAL_98___
AAAAGGGGGGTTGGAACCAAGGAAAACC
18._SIC_1___
AAAAGGGGGGTTGGAACCAAGGAAAACC
19._SIC_2___
AAGGGGGGGGTTGGAACCAAGGAAAACC
20._EEG_27___
AAAAGGGGGGTTGGAACCACGGAAAACG
21._JA_9_/37_[POU]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
22._SIAL_169___
AAAGGGGGGGTTGGAGCCCCGGAAAACG
23._SIAL_505___
AAAGGGGGGGTTGGAGCCCCGGAAAACG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
ACGGAAAAGGAACCGGAGAAAAAAAACC
1._BE_10___
AAGGAAAAGGAACCGGAAAAAAAAAACC
2._B_12_/2_[POU]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
3._SC_9_[UNK]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
4._AMELONADO_[VAR]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
5._LCT_EEN_46___
AAGGAAAAGGAACCGGAAAAAAAAAACC
6._UF_273___
AAGGAAAAGGAACCGGAAAAAAAAAACC
7._AMELONADO_[VAR]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
8._SIAL_42___
AAGGAAAAGGAACCGGAAAAAAAAAACC
9._GU_207___
AAGGAAAAGGAACCGGAAAAAAAAAACC
10._SIAL_70___
ACGGAAAAGGAACCGGAAAAAAAAAACC
11._CC_37___
ACGGAAAAGGAACCGGAAAAACAAAACC
12._SIC_7___
ACGGAAAAGGAACCGGAAAAACAAAACC
13._SIAL_88___
AAGGAAAAGGAACCGGAAAAAAAAAACC
14._SIC_628___
CCGGAAAAGGAACCGGAAAAAAAAAACC
15._MATINA_1_/6___
AAGGGGAAGGAACCGGAAAAAAAAAACC
16._MATINA_1_/6___
AAGGGGAAGGAACCGGAAAAAAAAAACC
17._SIAL_98___
CCGGAAAAGGAACCGGAAAAAAAAAACC
18._SIC_1___
CCGGAAAAGGAACCGGAAAAAAAAAACC
19._SIC_2___
ACGGAAAAGGAACCGGAAAAAAAAAACC
20._EEG_27___
ACGGAAAAGGAACCGGAAAAAAAAAACC
21._JA_9_/37_[POU]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
22._SIAL_169___
ACGGAAAAGGAACCGGAAAAACAAAACC
23._SIAL_505___
ACGGAAAAGGAACCGGAAAAACAAAACC
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AGCCGGGGAAACAAGGAGAAAAGGX_XX_X
1._BE_10___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
2._B_12_/2_[POU]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
3._SC_9_[UNK]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
4._AMELONADO_[VAR]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
5._LCT_EEN_46___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
6._UF_273___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
7._AMELONADO_[VAR]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
8._SIAL_42___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
9._GU_207___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
10._SIAL_70___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
11._CC_37___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
12._SIC_7___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
13._SIAL_88___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
14._SIC_628___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
15._MATINA_1_/6___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
16._MATINA_1_/6___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
17._SIAL_98___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
18._SIC_1___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
19._SIC_2___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
20._EEG_27___
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
21._JA_9_/37_[POU]___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X
22._SIAL_169___
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
23._SIAL_505___
GGCCGGGGAACCAACGGGAAAAGGX_XX_X

Input profile: N_38_[T38] RUQ_1159

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._BE_10 GC-08-90-2-13

95.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

2._B_12_/2_[POU] RUQ_436

95.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._SC_9_[UNK] RUQ_44

95.1 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._AMELONADO_[VAR] MITC-000366

95.1 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

5._LCT_EEN_46 MITC-000412

95.1 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

6._UF_273 MITC-000717

95.1 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

7._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

95.1 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 14, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

8._SIAL_42 SIAL_42_Fld#_146_Plt#_6

95.1 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 146, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

9._GU_207 GC-01-56-3-11

95.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._SIAL_70 GC-01-39-2-16

93.9 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 12, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._CC_37 CC_37_Fld#_69B_Plt#_4

93.9 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 69B, Tree: 4
 Mars, 2018

12._SIC_7 SIC_7_Fld#_68_Plt#_6

93.9 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 68, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

13._SIAL_88 GC-01-52-3-7

93.3 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._SIC_628 GC-06-15-1-15

92.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._MATINA_1_/6 RUQ_1715

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._MATINA_1_/6 MITC-000114

91.5 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

17._SIAL_98 SIAL_98_Fld#_84_Plt#_5

91.5 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 84, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

18._SIC_1 SIC_1_Fld#_51_Plt#_5

91.5 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 51, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

19._SIC_2 SIC_2_Fld#_120_Plt#_6

90.9 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 120, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

20._EEG_27 GC-08-254-8-22

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._JA_9_/37_[POU] GC-08-71-1-93

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._SIAL_169 GC-01-41-2-18

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._SIAL_505 GC-01-48-3-3

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 3, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998