SNP Profiles matching SC 1 [UNK]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCACAAAAAAGGAGCCAAGGGGAAAAAC
1._SCA_10___
CCACAAAAAAGGAGCCAAGGGGAAAAAC
2._NA_26___
CCACAAACAAAGAGCCAAGGGGAAAGAC
3._NA_26___
CCACAAACAAAGAGCCAAGGGGAAAGAC
4._ICS_39___
CCACAAACAAAGAGCCAAGGGGAAAACC
5._EET_272_[ECU]___
CCACAACCAAAGGGCCAAGGGGAAAACC
6._LZ_8___
CCCCAACCAAGGGGCCAAGGGGAAAACC
7._POUND_7_/B___
CCACAACCAAAGGGCCAAGGGGAAAACC
8._EET_272_[ECU]___
CCACAACCAAAGGGCCAAGGGGAAAACC
9._POUND_7___
CCACAACCAAAGGGCCAAGGGGAAAACC
10._POUND_7_/C___
CCACAACCAAAGGGCCAAGGGGAAAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAGGGAAGGACAAGGAACCGGGG
1._SCA_10___
AAAAAAAGGGAAGGACAAGGAACCGGGG
2._NA_26___
AAAAAAAAGGAAGGACAACGAACCAGGG
3._NA_26___
AAAAAAAAGGAAGGACAACGAACCAGGG
4._ICS_39___
AAAAAAAAGGAAGGACAAGGAACCAGGG
5._EET_272_[ECU]___
AAAAAAAAGGAAGGACAAGGAACCAGGG
6._LZ_8___
AAAAAAAAGGAAGGACAAGGAACCGGGG
7._POUND_7_/B___
AAAAAAAAGGAAGGACAAGGAACCAGGG
8._EET_272_[ECU]___
AAAAAAAAGGAAGGACAAGGAACCAGGG
9._POUND_7___
AAAAAAAAGGAAGGACAAGGAACCAGGG
10._POUND_7_/C___
AAAAAAAAGGAAGGACAAGGAACCAGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATGGAACGAGGGAGGGCCTTATGGGGAT
1._SCA_10___
ATGGAACGAGGGAGGGCCTTATGGGGAT
2._NA_26___
ATGGAACGAGGGAGGGCCTTTTGGGGAT
3._NA_26___
ATGGAACGAGGGAGGGCCTTTTGGGGAT
4._ICS_39___
AAGGACGGAGGGAGGGCCTTTTGGGGAT
5._EET_272_[ECU]___
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
6._LZ_8___
TTGGAAGGAAGGAGGGCCTTTTAGGGAA
7._POUND_7_/B___
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
8._EET_272_[ECU]___
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
9._POUND_7___
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
10._POUND_7_/C___
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AGGGGGGGAAGGAAAACCAACCGGGGAA
1._SCA_10___
AGGGGGGGAAGGAAAACCAACCGGGGAA
2._NA_26___
AGGGGGGGAAGGAGAACCAACCGGGGAC
3._NA_26___
AGGGGGGGAAGGAGAACCAACCGGGGAC
4._ICS_39___
AAGGGGGGAAGGAAAACCAAACGGGGAA
5._EET_272_[ECU]___
AGGGGGGGAAGGAAAACCGGACGGGGAA
6._LZ_8___
AGGGGGGGAAGGAAAACCGGACGGGGAA
7._POUND_7_/B___
AGGGGGGGAAGGAAAACCGGACGGGGAA
8._EET_272_[ECU]___
AGGGGGGGAAGGAAAACCGGACGGGGAA
9._POUND_7___
AGGGGGGGAAGGAAAACCGGACGGGGAA
10._POUND_7_/C___
AGGGGGGGAAGGAAAACCGGACGGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGAGAAAACCGGAAAAACAAACCCGG
1._SCA_10___
GGGGAGAAAACCGGAAAAACAAACCCGG
2._NA_26___
GGGGGGAAAACCGGAAAAACAACCCCGG
3._NA_26___
GGGGGGAAAACCGGAAAAACAACCCCGG
4._ICS_39___
GGGGGGAAAACCGGAAAAACAAACCCGG
5._EET_272_[ECU]___
GGGGAGAAAACCGGAAAACCAAACCCGG
6._LZ_8___
GGGGAGAAAACCGGAAAACCAAACCCGG
7._POUND_7_/B___
GGGGAGAAAACCGGAAAACCAAACCCGG
8._EET_272_[ECU]___
GGGGAGAAAACCGGAAAACCAAACCCGG
9._POUND_7___
GGGGAGAAAACCGGAAAACCAAACCCGG
10._POUND_7_/C___
GGGGAGAAAACCGGAAAACCAAACCCGG
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
1._SCA_10___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
2._NA_26___
GGGGGGGGCCAGGGGGAAAGAGX_XX_XX_X
3._NA_26___
GGGGGGGGCCAGGGGGAAAGAGX_XX_XX_X
4._ICS_39___
GGGGGGGGCCAGGGGGATAAAGX_XX_XX_X
5._EET_272_[ECU]___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
6._LZ_8___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
7._POUND_7_/B___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
8._EET_272_[ECU]___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
9._POUND_7___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
10._POUND_7_/C___
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X

Input profile: SCA_9 RUQ_1064

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._SCA_10 RUQ_1730

identical
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._NA_26 RUQ_1230

92.6 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._NA_26 MITC-000034

92.6 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

4._ICS_39 RUQ_1089

90.7 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._EET_272_[ECU] RUQ_6

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._LZ_8 RUQ_1231

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._POUND_7_/B RUQ_24

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._EET_272_[ECU] MITC-000381

90.1 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

9._POUND_7 MITC-000106

90.1 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

10._POUND_7_/C Pound_7/C_Fld_6B_Fld#_176_Plt#_2

90.1 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 176, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998