SNP Profiles matching POUND 25 /A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGACAAAGGGACAAGGGGAAAACC
1._RB_47_[BRA]___
CCCCGGACAAAGGGACAAGGGGAAAACC
2._RB_46_[BRA]___
CCCCGG__AA__GGCCAAGGGGAAAAAC
3._RB_48_[BRA]___
AAACGGACAAAGGGCCAAGGGGAAAACC
4._RB_39_[BRA]___
CCCCGGCCAAAAGGCCAAGGGGAAAAAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAAGAAGGGGGGACGGAACCGGGG
1._RB_47_[BRA]___
AACCAAAGAAGGGGGGACGGAACCGGGG
2._RB_46_[BRA]___
AACCAAAGAAGG__GG__GGAACCAGGG
3._RB_48_[BRA]___
AA__AAGGAAGGAGGGCCGGAACCGGGG
4._RB_39_[BRA]___
AACCAAAGAAGGGGGG__GGAACCAGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AAGGCCCCAAGGAGGGCCAAAAAGGGAA
1._RB_47_[BRA]___
AAGGCCCCAAGGAGGGCCAAAAAGGGAA
2._RB_46_[BRA]___
TTGGCCCCAAGGAGGGCCATAAAAGGAA
3._RB_48_[BRA]___
AAGGCCCCAGGGAAGGCCAAAAAGGGAA
4._RB_39_[BRA]___
TTGGCCCCAAGGAGGGCCATAAAAGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGAAGGGGAACCAACCACAACCGGGGCC
1._RB_47_[BRA]___
GGAAGGGGAACCAACCACAACCGGGGCC
2._RB_46_[BRA]___
GGAAGGGGAACCAAACAC__CC__CGAC
3._RB_48_[BRA]___
GGAAGGGGAACCAACCACAACCGGCGAC
4._RB_39_[BRA]___
GGAAGGGGAACCAAACACAACCGGCGAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGGGAAAACCAAAACCCCAAACCCAA
1._RB_47_[BRA]___
GGGGGGAAAACCAAAACCCCAAACCCAA
2._RB_46_[BRA]___
GGGGGGAAAACCAAAACCAC__ACCCAA
3._RB_48_[BRA]___
GGGGGGAAAACCAAAACCCCAACCCCAA
4._RB_39_[BRA]___
GGGGGGAAAACCAAAACCACAAACCCAA
 71 72 73 74 75 76 77 78 79 80 81    
_Input profile
CCAAGGGGCCAGCGGGAAGGAAX_XX_XX_X
1._RB_47_[BRA]___
CCAAGGGGCCAGCGGGAAGGAAX_XX_XX_X
2._RB_46_[BRA]___
CC__GGGGCCAA__GGAAGGAAX_XX_XX_X
3._RB_48_[BRA]___
CGAAGGAGCCAGCGGGAAGGAAX_XX_XX_X
4._RB_39_[BRA]___
CCAAGGGGCCAACCGGAAGGAAX_XX_XX_X

Input profile: POUND_25_/A GC-08-86-2-9

 
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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1 > FP2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._RB_47_[BRA] GC-05-101-3-3

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._RB_46_[BRA] RUQ_134

91.7 %
72 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._RB_48_[BRA] RUQ_1720

91.3 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._RB_39_[BRA] GC-01-42-2-19

90.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998