SNP Profiles matching POUND 25 /A

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 Key

 1234567891011121314
_Input profile
CCCCGGACAAAGGGACAAGGGGAAAACC
1._GC-05-101-3-3
CCCCGGACAAAGGGACAAGGGGAAAACC
2._RUQ_134
CCCCGG_AA_GGCCAAGGGGAAAAAC
3._RUQ_1720
AAACGGACAAAGGGCCAAGGGGAAAACC
4._GC-01-42-2-19
CCCCGGCCAAAAGGCCAAGGGGAAAAAC
 1516171819202122232425262728
_Input profile
AACCAAAGAAGGGGGGACGGAACCGGGG
1._GC-05-101-3-3
AACCAAAGAAGGGGGGACGGAACCGGGG
2._RUQ_134
AACCAAAGAAGG_GG_GGAACCAGGG
3._RUQ_1720
AA_AAGGAAGGAGGGCCGGAACCGGGG
4._GC-01-42-2-19
AACCAAAGAAGGGGGG_GGAACCAGGG
 2930313233343536373839404142
_Input profile
AAGGCCCCAAGGAGGGCCAAAAAGGGAA
1._GC-05-101-3-3
AAGGCCCCAAGGAGGGCCAAAAAGGGAA
2._RUQ_134
TTGGCCCCAAGGAGGGCCATAAAAGGAA
3._RUQ_1720
AAGGCCCCAGGGAAGGCCAAAAAGGGAA
4._GC-01-42-2-19
TTGGCCCCAAGGAGGGCCATAAAAGGAA
 4344454647484950515253545556
_Input profile
GGAAGGGGAACCAACCACAACCGGGGCC
1._GC-05-101-3-3
GGAAGGGGAACCAACCACAACCGGGGCC
2._RUQ_134
GGAAGGGGAACCAAACAC_CC_CGAC
3._RUQ_1720
GGAAGGGGAACCAACCACAACCGGCGAC
4._GC-01-42-2-19
GGAAGGGGAACCAAACACAACCGGCGAC
 5758596061626364656667686970
_Input profile
GGGGGGAAAACCAAAACCCCAAACCCAA
1._GC-05-101-3-3
GGGGGGAAAACCAAAACCCCAAACCCAA
2._RUQ_134
GGGGGGAAAACCAAAACCAC_ACCCAA
3._RUQ_1720
GGGGGGAAAACCAAAACCCCAACCCCAA
4._GC-01-42-2-19
GGGGGGAAAACCAAAACCACAAACCCAA
 7172737475767778798081   
_Input profile
CCAAGGGGCCAGCGGGAAGGAAX_XX_XX_X
1._GC-05-101-3-3
CCAAGGGGCCAGCGGGAAGGAAX_XX_XX_X
2._RUQ_134
CC_GGGGCCAA_GGAAGGAAX_XX_XX_X
3._RUQ_1720
CGAAGGAGCCAGCGGGAAGGAAX_XX_XX_X
4._GC-01-42-2-19
CCAAGGGGCCAACCGGAAGGAAX_XX_XX_X

Input profile: POUND_25_/A GC-08-86-2-9

 
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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1 > FP2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._RB_47_[BRA] GC-05-101-3-3

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 3, Rep: 3, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._RB_46_[BRA] RUQ_134

91.7 %
72 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._RB_48_[BRA] RUQ_1720

91.3 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._RB_39_[BRA] GC-01-42-2-19

90.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 15, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998