SNP Profiles matching SIAL 98

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCAAAAAAGGAACCAAGGAAAAGGCC
1._Round_Leaf_Cacao___
CCCCAAAAAAGGAACCAAGGAAAAGGCC
2._SIAL_88___
CCCCAAAAAAGGAACCAAGGAAAAAACC
3._POUND_5_/C___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
4._SIAL_70___
CCCCAAAAAAGGAACCAAGGAGAAAACC
5._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAGGCC
6._SIAL_44___
CCCCAAAAAAGGAACCAAGGAAAAAAAC
7._BE_10___
CCCCAAAAAAGGAACCAAGGGGAAAACC
8._B_12_/2_[POU]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
9._SC_9_[UNK]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
10._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
11._LCT_EEN_46___
CCCCAAAAAAGGAACCAAGGGGAAAACC
12._UF_273___
CCCCAAAAAAGGAACCAAGGGGAAAACC
13._AMELONADO_[VAR]___
CCCCAAAAAAGGAACCAAGGGGAAAACC
14._SIAL_42___
CCCCAAAAAAGGAACCAAGGGGAAAACC
15._SIAL_98___
CCCCAAAAAAGGAACCAAGGAAAAAACC
16._GU_207___
CCCCAAAAAAGGAACCAAGGGGAAAACC
17._SIC_628___
CCCCAAAAAAGGAACCAAGGAAAAAACC
18._GU_300___
CCACAAAAAAGGAACCAAGGAAAAAACC
19._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
20._MATINA_1_/6___
CCAAAAAAAAGGAACCAAGGAAAAAACC
21._SIAL_169___
CCACAAAAAAGGAACCAAGGAAAAAACC
22._SIAL_505___
CCACAAAAAAGGAACCAAGGAAAAAACC
23._CC_37___
CCCCAAAAAAGGAACCAAGGGGAAAACC
24._SIC_7___
CCCCAAAAAAGGAACCAAGGGGAAAACC
25._CATONGO_1___
CCAAAAAAAAGGAACCAAGGAAAAAAAA
26._EEG_27___
CCAAAAAAAAGGAACCAAGGAAAAAGCC
27._JA_9_/37_[POU]___
CCAAAAAAAAGGAACCAAGGAAAAAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAAAAAGGAAAAAAGGCCGGAAGG
1._Round_Leaf_Cacao___
AAAAAAAAAAGGAAAAAAGGCCGGAAGG
2._SIAL_88___
AGAAGGAAAAGGAAAAAAGGCCAAAAGG
3._POUND_5_/C___
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
4._SIAL_70___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
5._CATONGO_1___
GGAAGGAAAAGGAAAAAAGGCCGGAAGG
6._SIAL_44___
AAAAAGAAACGGAAAACCAGCCAGAAGG
7._BE_10___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
8._B_12_/2_[POU]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
9._SC_9_[UNK]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
10._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
11._LCT_EEN_46___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
12._UF_273___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
13._AMELONADO_[VAR]___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
14._SIAL_42___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
15._SIAL_98___
AAAAAAAAAAGGAAAACCGGCCAAAAGG
16._GU_207___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
17._SIC_628___
GGAAGGAAAAGGAAAAAAGGCCAAAAGG
18._GU_300___
GGAAGGAAAAGGAAAAAAAGCCAGAAGG
19._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
20._MATINA_1_/6___
AAAAGGAAAAGGAAAACCGGCCAAAAGG
21._SIAL_169___
AGAAGGAAAAGGAAAAACGGCCAGAAGG
22._SIAL_505___
AGAAGGAAAAGGAAAAACGGCCAGAAGG
23._CC_37___
AGAAGGAAACGGAAAAACGGCCAAAAGG
24._SIC_7___
AGAAGGAAACGGAAAAACGGCCAAAAGG
25._CATONGO_1___
AAAAGGAAAAGGAAAAACAACCGGAAGG
26._EEG_27___
AGAAGGAA__GGAAAAACAGCCAAAAGG
27._JA_9_/37_[POU]___
GGAAGGAA__GGAAAACCGGCCAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAAGGAAGGGGGGCCTTTTGGGG
1._Round_Leaf_Cacao___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
2._SIAL_88___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
3._POUND_5_/C___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
4._SIAL_70___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
5._CATONGO_1___
AATTGGAAGGAAGGGGGG__TTTTGGGG
6._SIAL_44___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
7._BE_10___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
8._B_12_/2_[POU]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
9._SC_9_[UNK]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
10._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
11._LCT_EEN_46___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
12._UF_273___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
13._AMELONADO_[VAR]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
14._SIAL_42___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
15._SIAL_98___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
16._GU_207___
AATTGGAAGGAAGGGGGG__TTTTGGGG
17._SIC_628___
AATTGGAAGGAAGGGGGG__TTTTGGGG
18._GU_300___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
19._MATINA_1_/6___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
20._MATINA_1_/6___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
21._SIAL_169___
AATTGGAAGGAAGGGGGGCCTT__GGGG
22._SIAL_505___
AATTGGAAGGAAGGGGGG__TTTTGGGG
23._CC_37___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
24._SIC_7___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
25._CATONGO_1___
AATTGGAAGGAAGGGGGG__TTTTGGGG
26._EEG_27___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
27._JA_9_/37_[POU]___
AATTGGAAGGAAGGGGGGCCTTTTGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAGGGGGGTTGGGGCCCCGGAAAACC
1._Round_Leaf_Cacao___
AAAAGGGGGGTTGGGGCCCCGGAAAACC
2._SIAL_88___
AAAAGGGGGGTTGGAACCCCGGAAAACC
3._POUND_5_/C___
AAAAGGGGGGTTGGAACCCCGGAAAACC
4._SIAL_70___
AAAAGGGGGGTTGGGGCCCCGGAAAACC
5._CATONGO_1___
AAAAGGGGGGTTGGAACCCCGGAAAACC
6._SIAL_44___
AAAAGGGGGGTTGGAGCCCCGGAAAACG
7._BE_10___
AAAAGGGGGGTTGGAACCCCGGAAAACC
8._B_12_/2_[POU]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
9._SC_9_[UNK]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
10._AMELONADO_[VAR]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
11._LCT_EEN_46___
AAAAGGGGGGTTGGAACCCCGGAAAACC
12._UF_273___
AAAAGGGGGGTTGGAACCCCGGAAAACC
13._AMELONADO_[VAR]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
14._SIAL_42___
AAAAGGGGGGTTGGAACCCCGGAAAACC
15._SIAL_98___
AAAAGGGGGGTTGGAACCAAGGAAAACC
16._GU_207___
AAAAGGGGGGTTGGAACCCCGGAAAACC
17._SIC_628___
AAAAGGGGGGTTGGAACCCCGGAAAACC
18._GU_300___
AAGGGGGGGGTTGGAGCCCCGGAAAACC
19._MATINA_1_/6___
AAAAGGGGGGTTGGAACCCCGGAAAACC
20._MATINA_1_/6___
AAAAGGGGGGTTGGAACCCCGGAAAACC
21._SIAL_169___
AAAGGGGGGGTTGGAGCCCCGGAAAACG
22._SIAL_505___
AAAGGGGGGGTTGGAGCCCCGGAAAACG
23._CC_37___
AAAGGGGGGGTTGGAACCCCGGAAAACC
24._SIC_7___
AAAGGGGGGGTTGGAACCCCGGAAAACC
25._CATONGO_1___
AAAGGGGGGGTTGGAACCCCGGAAAACC
26._EEG_27___
AAAAGGGGGGTTGGAACCACGGAAAACG
27._JA_9_/37_[POU]___
AAAAGGGGGGTTGGAACCCCGGAAAACC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGAAAAGGAACCGGAAAAAAAAAACC
1._Round_Leaf_Cacao___
AAGGAAAAGGAACCGGAAAAAAAAAACC
2._SIAL_88___
AAGGAAAAGGAACCGGAAAAAAAAAACC
3._POUND_5_/C___
AAGGAAAAGGAACCGGAAAAAAAAAACC
4._SIAL_70___
ACGGAAAAGGAACCGGAAAAAAAAAACC
5._CATONGO_1___
AAGGAAAAGGAACCGGAAAAAAAAAACC
6._SIAL_44___
AAGGAAAAGGAACCGGAAAAAAAAAACC
7._BE_10___
AAGGAAAAGGAACCGGAAAAAAAAAACC
8._B_12_/2_[POU]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
9._SC_9_[UNK]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
10._AMELONADO_[VAR]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
11._LCT_EEN_46___
AAGGAAAAGGAACCGGAAAAAAAAAACC
12._UF_273___
AAGGAAAAGGAACCGGAAAAAAAAAACC
13._AMELONADO_[VAR]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
14._SIAL_42___
AAGGAAAAGGAACCGGAAAAAAAAAACC
15._SIAL_98___
CCGGAAAAGGAACCGGAAAAAAAAAACC
16._GU_207___
AAGGAAAAGGAACCGGAAAAAAAAAACC
17._SIC_628___
CCGGAAAAGGAACCGGAAAAAAAAAACC
18._GU_300___
AAGGAAAAGGAACCGGAAAAACAAAACC
19._MATINA_1_/6___
AAGGGGAAGGAACCGGAAAAAAAAAACC
20._MATINA_1_/6___
AAGGGGAAGGAACCGGAAAAAAAAAACC
21._SIAL_169___
ACGGAAAAGGAACCGGAAAAACAAAACC
22._SIAL_505___
ACGGAAAAGGAACCGGAAAAACAAAACC
23._CC_37___
ACGGAAAAGGAACCGGAAAAACAAAACC
24._SIC_7___
ACGGAAAAGGAACCGGAAAAACAAAACC
25._CATONGO_1___
AAGGAAAAGGAACCGGAAAAAAAAAACC
26._EEG_27___
ACGGAAAAGGAACCGGAAAAAAAAAACC
27._JA_9_/37_[POU]___
AAGGAAAAGGAACCGGAAAAAAAAAACC
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
1._Round_Leaf_Cacao___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
2._SIAL_88___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
3._POUND_5_/C___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X
4._SIAL_70___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
5._CATONGO_1___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X
6._SIAL_44___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
7._BE_10___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
8._B_12_/2_[POU]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
9._SC_9_[UNK]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
10._AMELONADO_[VAR]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
11._LCT_EEN_46___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
12._UF_273___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
13._AMELONADO_[VAR]___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
14._SIAL_42___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
15._SIAL_98___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
16._GU_207___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
17._SIC_628___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
18._GU_300___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
19._MATINA_1_/6___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
20._MATINA_1_/6___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
21._SIAL_169___
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
22._SIAL_505___
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
23._CC_37___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
24._SIC_7___
GGCCGGGGAACCAAGGGGAAAAGGX_XX_X
25._CATONGO_1___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X
26._EEG_27___
GGCCGGGGAACCAACGGGAAAAGGX_XX_X
27._JA_9_/37_[POU]___
GGCCGGGGAACCAACCGGAAAAGGX_XX_X

Input profile: Round_Leaf_Cacao Round_Leaf_Cacao_Fld#_203_Plt#_2

 
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USDA-TARS, United States of America
Location: Field: 203, Tree: 2
 Mars, 2018

1._Round_Leaf_Cacao ROUND_LEAF_Fld#_203_Plt#_1

identical
82 shared markers

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USDA-TARS, United States of America
Location: Field: 203, Tree: 1
Notes: TARS_Cacao_collection
 Mars, 2018

2._SIAL_88 GC-01-52-3-7

94.5 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 7, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._POUND_5_/C GC-01-118-6-15

93.9 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 13
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

4._SIAL_70 GC-01-39-2-16

93.9 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 12, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._CATONGO_1 GC-08-109-3-8

93.8 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._SIAL_44 SIAL_44_Fld#_66_Plt#_5

93.3 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 66, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

7._BE_10 GC-08-90-2-13

92.7 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

8._B_12_/2_[POU] RUQ_436

92.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._SC_9_[UNK] RUQ_44

92.7 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._AMELONADO_[VAR] MITC-000366

92.7 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

11._LCT_EEN_46 MITC-000412

92.7 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

12._UF_273 MITC-000717

92.7 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

13._AMELONADO_[VAR] AMELONADO_[VAR]_Fld#_14_Plt#_5

92.7 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 14, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

14._SIAL_42 SIAL_42_Fld#_146_Plt#_6

92.7 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 146, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

15._SIAL_98 SIAL_98_Fld#_84_Plt#_5

92.7 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 84, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

16._GU_207 GC-01-56-3-11

92.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._SIC_628 GC-06-15-1-15

92.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_300 GC-08-63-1-85

92.1 %
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 85, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._MATINA_1_/6 RUQ_1715

91.5 %
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._MATINA_1_/6 MITC-000114

91.5 %
82 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

21._SIAL_169 GC-01-41-2-18

91.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 14, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._SIAL_505 GC-01-48-3-3

91.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 3, Rep: 3, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._CC_37 CC_37_Fld#_69B_Plt#_4

90.2 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 69B, Tree: 4
 Mars, 2018

24._SIC_7 SIC_7_Fld#_68_Plt#_6

90.2 %
82 shared markers

 View  Any
USDA-TARS, United States of America
Location: Field: 68, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

25._CATONGO_1 GC-08-277-8-49

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

26._EEG_27 GC-08-254-8-22

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._JA_9_/37_[POU] GC-08-71-1-93

90.1 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 93, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998