SNP Profiles matching BE 8

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCTTCCGGAACCAACCGGGGAACC
1._MAR_1___
____CCTTCC__AA__AACC____AA__
2._MAR_20___
____CCTTCC__AA__AACC____AA__
3._GDL_3___
TTCCCCTTCCGGAACCAA__GGGGAA__
4._GDL_7___
TTCCCCTTCCGGAACCAACCGGGGAACC
5._GS_13___
TTCCCCTTCCAGAACCAACCGGGGAACC
6._DOM_30___
TTACCCTTCCAGAACCAACCGGGG__CC
7._LCT_EEN_62_/S-4___
TTCCCCTTCCGGAACCAACCGGGGAACC
8._BE_10___
____CCTTCC__AACCAACC____AA__
9._BE_10___
____CCTTCC__AACCAACC____AA__
10._BE_10___
____CCTTCC__AACCAACC____AA__
11._BE_10___
____CCTTCC__AACCAACC____AA__
12._BE_10___
____CCTTCC__AACCAACC____AA__
13._BE_10___
____CCTTCC__AACCAACC____AA__
14._BE_10___
____CCTTCC__AACCAACC____AA__
15._BE_10___
____CCTTCC__AACCAACC____AA__
16._BE_10___
____CCTTCC__AACCAACC____AA__
17._BE_10___
____CCTTCC__AACCAACC____AA__
18._GU_207_/H___
____CCTTCC__AACCAACC____AA__
19._GU_207_/H___
____CCTTCC__AACCAACC____AA__
20._GU_207_/H___
____CCTTCC__AACCAACC____AA__
21._GU_207_/H___
____CCTTCC__AACCAACC____AA__
22._GU_207_/H___
____CCTTCC__AACCAACC____AA__
23._GU_207_/H___
____CCTTCC__AACCAACC____AA__
24._GU_207_/H___
____CCTTCC__AACCAACC____AA__
25._GU_207_/H___
____CCTTCC__AACCAACC____AA__
26._JA_9_/37_[POU]___
____CCTTCC__AACCAACC____AA__
27._JA_9_/37_[POU]___
____CCTTCC__AACCAACC____AA__
28._JA_9_/37_[POU]___
____CCTTCC__AACCAACC____AA__
29._JA_9_/37_[POU]___
____CCTTCC__AACCAACC____AA__
30._AMAZ_5_/2___
____CCTTCC__AACCAACC____AA__
31._LCT_EEN_90_/S-7___
____CCTTCC__AA__AACC____AA__
32._PH_9_[BRA]___
TTCCCCTTCCGGAACCAACCGGGGAACC
33._DOM_25___
TTCCCCTTCCGGAACCAACCGGGGAACC
34._BE_10___
____CCTT____AACCAACC____AA__
35._BE_10___
____CCTTCC__AACCAACC____AA__
36._GU_207_/H___
______TTCC__AACCAACC____AA__
37._GU_207_/H___
____CCTTCC____CCAACC____AA__
38._BE_10___
____CCTTCC__AACCAA______AA__
39._SIAL_70___
____CCTT____AACCAACC____AA__
40._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAACCGGGGAACC
41._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAACCGGGGAACC
42._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAACCGGGGAACC
43._JA_9_/37_[POU]___
TTCCCCTTCCGGAACCAACCGGGGAACC
44._B_12_/2_[POU]___
TTCCCCTTCCGGAACCAACCGGGGAACC
45._GF_32___
TTCCAATTCCGGAACCAACCGGGGAACC
46._SPEC_41_/6-18___
TTCCCCTTCCGGAACCAACCGGGGAACC
47._APA_4___
TTCCCCTTCCGGAACCAACCGGGGAACC
48._SC_9_[UNK]___
TTCCCCTTCCGGAACCAACCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCTTTTGGAACCTTTTGGGGTTAAGG
1._MAR_1___
AACCTTTTGGAA__TT__________GG
2._MAR_20___
AACCTTTTGGAA__TT__________GG
3._GDL_3___
__CCTT__GGAATTTTTTGG__TT____
4._GDL_7___
AACCTTTTGGAACCCCTTGGGGTTCCGG
5._GS_13___
AACC__TTGGAACCTTTTGGGGTTCCCG
6._DOM_30___
AACC__TTGGAACCTTTTGGGGTTACGG
7._LCT_EEN_62_/S-4___
AACCTTTTGGCCTTTTTTGGGGTTCCGG
8._BE_10___
AACCTTTTCCAA__TT__GG______GG
9._BE_10___
AACCTTTTCCAA__TT__GG______GG
10._BE_10___
AACCTTTTCCAA__TT__GG______GG
11._BE_10___
AACCTTTTCCAA__TT__GG______GG
12._BE_10___
AACCTTTTCCAA__TT__GG______GG
13._BE_10___
AACCTTTTCCAA__TT__GG______GG
14._BE_10___
AACCTTTTCCAA__TT__GG______GG
15._BE_10___
AACCTTTTCCAA__TT__GG______GG
16._BE_10___
AACCTTTTCCAA__TT__GG______GG
17._BE_10___
AACCTTTTCCAA__TT__GG______GG
18._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
19._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
20._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
21._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
22._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
23._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
24._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
25._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
26._JA_9_/37_[POU]___
AACCTTTTCCAA__TT__GG______GG
27._JA_9_/37_[POU]___
AACCTTTTCCAA__TT__GG______GG
28._JA_9_/37_[POU]___
AACCTTTTCCAA__TT__GG______GG
29._JA_9_/37_[POU]___
AACCTTTTCCAA__TT__GG______GG
30._AMAZ_5_/2___
AACCTTTTCCAA__TT__GG______GG
31._LCT_EEN_90_/S-7___
AACCTTTTCCAA__TT__GG______GG
32._PH_9_[BRA]___
AACCTTTTCGAATTTTCCGGGGTTAAGG
33._DOM_25___
AACCTTTTGGCCCCCTTTGGGGTTACGG
34._BE_10___
AACCTTTTCCAA__TT__GG______GG
35._BE_10___
AACCTTTTCCAA__TT__GG______GG
36._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
37._GU_207_/H___
AACCTTTTCCAA__TT__GG______GG
38._BE_10___
AA__TTTTCCAA__TT__GG______GG
39._SIAL_70___
AACC__TTCC____TT__GG______GG
40._JA_9_/37_[POU]___
AACCTTTTCCAATTTTCCGGGGTTAAGG
41._JA_9_/37_[POU]___
AACCTTTTCCAATTTTCCGGGGTTAAGG
42._JA_9_/37_[POU]___
AACCTTTTCCAATTTTCCGGGGTTAAGG
43._JA_9_/37_[POU]___
AACCTTTTCCAATTTTCCGGGGTTAAGG
44._B_12_/2_[POU]___
AACCTTTTCCAATTTTTTGGGGTTAAGG
45._GF_32___
AACCTTTTGGAACCCCTTGGGGTTCCGG
46._SPEC_41_/6-18___
AACCTTTTCCAACCCCTTGGGGTTAAGG
47._APA_4___
AACC__TTCCAACCCCTTGGGGTTAAGG
48._SC_9_[UNK]___
AACC__TTCCAATTTTTTGGGGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAATTCCGGAATTTTTTTTCCGGAA
1._MAR_1___
CCCCAA__CC______TT____CCGGAA
2._MAR_20___
CCCCAA__CC______TT____CCGGAA
3._GDL_3___
CCCCAA__CCGG__TTTTTT____GGAA
4._GDL_7___
CCCCAATTCCGGAATTTTTTTTCCGGAA
5._GS_13___
CCCCAATTCCGGAATTTTTTTTCCGGAA
6._DOM_30___
CCCCAATTCCGGAATTTTCTTTCCGGAA
7._LCT_EEN_62_/S-4___
CCCCAATTCCGGAATTTTTTTTCCGGAA
8._BE_10___
__CCGG__CC______TT____CCGGAA
9._BE_10___
__CCGG__CC______TT____CCGGAA
10._BE_10___
__CCGG__CC______TT____CCGGAA
11._BE_10___
__CCGG__CC______TT____CCGGAA
12._BE_10___
__CCGG__CC______TT____CCGGAA
13._BE_10___
__CCGG__CC______TT____CCGGAA
14._BE_10___
__CCGG__CC______TT____CCGGAA
15._BE_10___
__CCGG__CC______TT____CCGGAA
16._BE_10___
__CCGG__CC______TT____CCGGAA
17._BE_10___
__CCGG__CC______TT____CCGGAA
18._GU_207_/H___
__CCGG__CC______TT____CCGGAA
19._GU_207_/H___
__CCGG__CC______TT____CCGGAA
20._GU_207_/H___
__CCGG__CC______TT____CCGGAA
21._GU_207_/H___
__CCGG__CC______TT____CCGGAA
22._GU_207_/H___
__CCGG__CC______TT____CCGGAA
23._GU_207_/H___
__CCGG__CC______TT____CCGGAA
24._GU_207_/H___
__CCGG__CC______TT____CCGGAA
25._GU_207_/H___
__CCGG__CC______TT____CCGGAA
26._JA_9_/37_[POU]___
__CCGG__CC______TT____CCGGAA
27._JA_9_/37_[POU]___
__CCGG__CC______TT____CCGGAA
28._JA_9_/37_[POU]___
__CCGG__CC______TT____CCGGAA
29._JA_9_/37_[POU]___
__CCGG__CC______TT____CCGGAA
30._AMAZ_5_/2___
__CCGG__CC______TT____CCGGAA
31._LCT_EEN_90_/S-7___
CCCCGG__CC______TT____CCGGAA
32._PH_9_[BRA]___
CCCCGGTTCCGGAATTTTTTTTCCGGAA
33._DOM_25___
CGCCAGTTCCGGAATTTTTTTTCCGGAG
34._BE_10___
__CCGG__CC______TT____CCGGAA
35._BE_10___
__CCGG__CC____________CCGGAA
36._GU_207_/H___
__CCGG__CC______TT____CCGGAA
37._GU_207_/H___
__CCGG__CC______TT____CCGGAA
38._BE_10___
__CCGG__CC______TT____CCGGAA
39._SIAL_70___
__CCGG__CC______TT____CCGGAA
40._JA_9_/37_[POU]___
CCCCGGTTCCGGAATTTTTTTTCCGGAA
41._JA_9_/37_[POU]___
CCCCGGTTCCGGAATTTTTTTTCCGGAA
42._JA_9_/37_[POU]___
CCCCGGTTCCGGAATTTTTTTTCCGGAA
43._JA_9_/37_[POU]___
CCCCGGTTCCGGAATTTTTTTTCCGGAA
44._B_12_/2_[POU]___
CCCCGGTTCCGGGGTTTTTTTTCCGGAA
45._GF_32___
CCCCAATTCCGGGGTTTTTTTTCCGGAA
46._SPEC_41_/6-18___
CCCCGGTTCCGGAATTTTCCTTCCGGAA
47._APA_4___
CCCCGGTTCCGGAATTTTCCTTCCGGAA
48._SC_9_[UNK]___
CCCCGGTTCCGGGGTTTTTTTTCCGGAA

Input profile: MAR_9 RUQ_557

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

identical
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._GDL_3 RUQ_553

96.8 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._GDL_7 RUQ_554

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GS_13 RUQ_683

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._DOM_30 RUQ_549

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._LCT_EEN_62_/S-4 RUQ_678

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

9._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

10._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

11._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

12._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

13._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

14._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

15._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

16._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

17._BE_10

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016

18._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 6 > FP
 Dapeng Zhang, 2016

19._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 12 > F
 Dapeng Zhang, 2016

20._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 1 > FP
 Dapeng Zhang, 2016

21._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 11
 Dapeng Zhang, 2016

22._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 10
 Dapeng Zhang, 2016

23._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 9
 Dapeng Zhang, 2016

24._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 7
 Dapeng Zhang, 2016

25._GU_207_/H

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 4
 Dapeng Zhang, 2016

26._JA_9_/37_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

27._JA_9_/37_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

28._JA_9_/37_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

29._JA_9_/37_[POU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016

30._AMAZ_5_/2

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

31._LCT_EEN_90_/S-7

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

32._PH_9_[BRA] GC-08-110-3-09

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._DOM_25 RUQ_673

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

34._BE_10

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

35._BE_10

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

36._GU_207_/H

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 13
 Dapeng Zhang, 2016

37._GU_207_/H

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 2
 Dapeng Zhang, 2016

38._BE_10

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

39._SIAL_70

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8353 1
 Dapeng Zhang, 2016

40._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

41._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

42._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

43._JA_9_/37_[POU] GC-08-071-1-93

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

44._B_12_/2_[POU] RUQ_436

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

45._GF_32 RUQ_648

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

46._SPEC_41_/6-18 RUQ_1325

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

47._APA_4 RUQ_843

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

48._SC_9_[UNK] RUQ_44

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484