SNP Profiles matching OC 61 [VEN]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
1._ICS_5___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
2._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
3._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
4._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
5._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
6._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
7._PA_70_[PER]___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
8._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
9._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
10._ICS_1___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
11._ICS_1___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
12._ICS_1___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
13._ICS_1___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
14._ICS_1___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
15._PA_70_[PER]___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
16._ICS_1___	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
17._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__
18._ICS_1___	__	__	AA	GT	CC	__	AA	CG	AG	CT	__	__	AT	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	TT	TT	CC	AA	CT	TT	CT	GT	GG	GT	AC	CG
1._ICS_5___	AG	CC	TT	TT	CC	AA	CT	TT	CT	GT	GG	GT	AC	CG
2._ICS_1___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
3._ICS_1___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
4._ICS_1___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
5._ICS_1___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
6._ICS_1___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
7._PA_70_[PER]___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
8._ICS_1___	AG	CC	TT	TT	__	AC	__	TT	__	GT	__	__	__	CG
9._ICS_1___	__	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	__
10._ICS_1___	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
11._ICS_1___	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
12._ICS_1___	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
13._ICS_1___	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
14._ICS_1___	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
15._PA_70_[PER]___	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
16._ICS_1___	AG	CC	TT	TT	__	AC	CT	TT	CC	GT	GG	GT	AC	CG
17._ICS_1___	AG	CC	TT	TT	CC	AC	__	TT	__	GT	__	__	__	CG
18._ICS_1___	AG	CC	CT	TT	CC	AC	__	CT	__	GT	__	__	__	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CG	CC	AG	TT	GT	AA	AA	TT	CT	TT	CT	GG	AA	X_X
1._ICS_5___	CG	CC	AG	TT	GT	AA	AA	TT	CT	TT	CT	GG	AA	X_X
2._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
3._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
4._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
5._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
6._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
7._PA_70_[PER]___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
8._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
9._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AA	X_X
10._ICS_1___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
11._ICS_1___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
12._ICS_1___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
13._ICS_1___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
14._ICS_1___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
15._PA_70_[PER]___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
16._ICS_1___	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
17._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AG	X_X
18._ICS_1___	__	CC	AG	TT	__	__	__	TT	__	__	CT	GG	AG	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_5 RUQ_817

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

3._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

7._PA_70_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

8._ICS_1

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

9._ICS_1

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

10._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

14._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._PA_70_[PER] GC-04-053-3-17

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

16._ICS_1 NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._ICS_1 RUQ_847

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484