SNP Profiles matching IMC 16

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGTCTGGACCGAGCTAAGGAACC
1._IMC_11___
____ACGTCT__ACCGAGTT____AA__
2._IMC_11___
____ACGTCT__ACCGAGTT____AA__
3._IMC_14___
____ACGTCT__AC__AGTT____AA__
4._IMC_47___
____CCGTCT__AC__AGTT____AA__
5._IMC_54___
______GTCT__ACCCAGCT____AA__
6._IMC_96___
____CCGTCC__AC__AGCT____AA__
7._IMC_96___
____CCGTCC__AC__AGCT____AA__
8._IMC_11___
TTCCACGTCTGGACCGAGTTAGGGAACC
9._IMC_14___
TTCCACGTCTGGACCGAGTTAGGGAACC
10._IMC_6___
TTCCACGTCTGGACCGAGTTAGGGAACC
11._IMC_11___
____ACGTCT__AACGAGTT____AA__
12._IMC_11___
____ACGTCT__AACGAGTT____AA__
13._IMC_11___
____ACGTCT__AACGAGTT____AA__
14._IMC_11___
____ACGTCT__AACGAGTT____AA__
15._IMC_14___
____ACGTCT__AACGAGTT____AA__
16._IMC_14___
____ACGTCT__AACGAGTT____AA__
17._IMC_14___
____ACGTCT__AACGAGTT____AA__
18._IMC_14___
____ACGTCT__AACGAGTT____AA__
19._IMC_14___
____ACGTCT__AACGAGTT____AA__
20._IMC_14___
____ACGTCT__AACGAGTT____AA__
21._IMC_14___
____ACGTCT__AACGAGTT____AA__
22._IMC_54___
TTCCCCGTCTGGACCCAGTTAGGGAACC
23._IMC_58___
TTCCCCGTCTGGACCCAGTTAGGGAACC
24._IMC_11___
____ACGTCT__AACGAGTT____AA__
25._IMC_14___
____ACGTCT__AACGAGTT____AA__
26._IMC_14___
____ACGTCT__AACGAGTT____AA__
27._IMC_14___
____ACGTCT__AACGAGTT____AA__
28._IMC_14___
____ACGTCT__AACGAGTT____AA__
29._IMC_14___
____ACGTCT__AACGAGTT____AA__
30._IMC_14___
____ACGTCT__AACGAGTT____AA__
31._IMC_78___
TTCCCCGTCCGGAC__AGTTAAGGAACC
32._EBC_148___
TTCCCCTTCCGGACCGAGTTAGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCTGTGGAACTCCTTGGGGTTACCC
1._IMC_11___
AACCCTGGGGAA__CC__GG______CC
2._IMC_11___
AACCCTGGGGAA__CC__GG______CC
3._IMC_14___
AACCCTGGGGAA__CC__GG______CC
4._IMC_47___
AACCCTGTGGAA__CC__GG______CC
5._IMC_54___
AACCCTGTGGAA__CC__GG______CC
6._IMC_96___
AACCCTGTGG____CC__GG______CC
7._IMC_96___
AACCCTGTGG____CC__GG______CC
8._IMC_11___
AACCCTGGGGAACCCCTTGGGGTTACCC
9._IMC_14___
AACCCTGGGGAACCCCTTGGGGTTACCC
10._IMC_6___
AACCCTGGGGAACCCCTTGGGGTTACCC
11._IMC_11___
AACCCTGGGGAA__CC__GG______CC
12._IMC_11___
AACCCTGGGGAA__CC__GG______CC
13._IMC_11___
AACCCTGGGGAA__CC__GG______CC
14._IMC_11___
AACCCTGGGGAA__CC__GG______CC
15._IMC_14___
AACCCTGGGGAA__CC__GG______CC
16._IMC_14___
AACCCTGGGGAA__CC__GG______CC
17._IMC_14___
AACCCTGGGGAA__CC__GG______CC
18._IMC_14___
AACCCTGGGGAA__CC__GG______CC
19._IMC_14___
AACCCTGGGGAA__CC__GG______CC
20._IMC_14___
AACCCTGGGGAA__CC__GG______CC
21._IMC_14___
AACCCTGGGGAA__CC__GG______CC
22._IMC_54___
AACCCTGTGGAACCCCTTGGGGTTACCC
23._IMC_58___
AACCCTGTGGAACCCCTTGGGGTTACCC
24._IMC_11___
AA__CTGGGGAA__CC__GG______CC
25._IMC_14___
AACCCTGGGGAA__CC__GG______CC
26._IMC_14___
AACCCTGGGGAA__CC__GG______CC
27._IMC_14___
AACCCTGGGGAA__CC__GG______CC
28._IMC_14___
AACCCTGGGGAA__CC__GG______CC
29._IMC_14___
AACCCTGGGGAA__CC__GG______CC
30._IMC_14___
AACCCTGGGGAA__CC__GG______CC
31._IMC_78___
AAACCCGT__ACCT__TT__GGTTACCC
32._EBC_148___
AACCCTGTGGAACTCCTTGGGGTTAACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCTGGGGTTGTCTCCTTCGAG
1._IMC_11___
__CCAA__CT______GT____TTCGAG
2._IMC_11___
__CCAA__CT______GT____TTCGAG
3._IMC_14___
__CCAA__CT______GT____TTCGAG
4._IMC_47___
__CTAA__CT______GT____TTGGAG
5._IMC_54___
__CTAA__CT______TT______CGAG
6._IMC_96___
__CTAA__CT______TT____TTCGAG
7._IMC_96___
__CTAA__CT______TT____TTCGAG
8._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
9._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
10._IMC_6___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
11._IMC_11___
__CCAA__CT______GT____TTCGAG
12._IMC_11___
__CCAA__CT______GT____TTCGAG
13._IMC_11___
__CCAA__CT______GT____TTCGAG
14._IMC_11___
__CCAA__CT______GT____TTCGAG
15._IMC_14___
__CCAA__CT______GT____TTCGAG
16._IMC_14___
__CCAA__CT______GT____TTCGAG
17._IMC_14___
__CCAA__CT______GT____TTCGAG
18._IMC_14___
__CCAA__CT______GT____TTCGAG
19._IMC_14___
__CCAA__CT______GT____TTCGAG
20._IMC_14___
__CCAA__CT______GT____TTCGAG
21._IMC_14___
__CCAA__CT______GT____TTCGAG
22._IMC_54___
CCTTAACCCTGGGGTTTTCTCCTTCGAG
23._IMC_58___
CCTTAACCCTGGGGTTTTCTCCTTCGAG
24._IMC_11___
__CCAA__CT______GT____TTCGAG
25._IMC_14___
__CCAA__CT____________TTCGAG
26._IMC_14___
__CCAA__CT____________TTCGAG
27._IMC_14___
__CCAA__CT____________TTCGAG
28._IMC_14___
__CCAA__CT____________TTCGAG
29._IMC_14___
__CCAA__CT____________TTCGAG
30._IMC_14___
__CCAA__CT____________TTCGAG
31._IMC_78___
__CC__CCCTGGGG__TT__CCTT____
32._EBC_148___
CC__AACCCCGGGGTTGGTTCCTTCGAG

Input profile: IMC_16 RUQ_861

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_11 RUQ_8

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._IMC_11

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

3._IMC_14

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

4._IMC_47

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

5._IMC_54 RUQ_11

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._IMC_96

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A46 T2
 Dapeng Zhang, 2016

7._IMC_96

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D562
 Dapeng Zhang, 2016

8._IMC_11 RUQ_8

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._IMC_14 RUQ_1634

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._IMC_6 RUQ_761

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

12._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

13._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

14._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016

15._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

16._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

17._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

18._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

19._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

20._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

21._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016

22._IMC_54 RUQ_11

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._IMC_58 RUQ_1633

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._IMC_11

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

25._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

26._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

27._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

28._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

29._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

30._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

31._IMC_78 RUQ_1678

90.6 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._EBC_148 RUQ_1599

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484