SNP Profiles matching NA 710

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGGCCGGAACCAGCCGGGGAACC
1._NA_710___
TTCCCCGGCCGGAACCAACCGGGGAACC
2._CRU_70___
TTCCCCGGCCGGAACCAACCGGGGAACC
3._NA_232___
TTCCCCGGCCGGAACCAACCGGGGAACC
4._NA_916___
TTCCCCGGCCGGAACCAGCCGGGGAACC
5._NA_756___
TTCCCCGGCCGGAACCAACCGGGGAACC
6._CRU_100___
TTCCCCGGCCGGAACCAACCGGGGAACC
7._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
8._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
9._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
10._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
11._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
12._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
13._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
14._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
15._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
16._NA_149___
TTCCCCGGCCGGAACCAACCGGGGAACC
17._NA_702___
TTCCCCGGCCGGAACCAACCGGGGAACC
18._POUND_5_/C___
TT__CCGGCCGGAACCAGCCGGGGAACC
19._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
20._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
21._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
22._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
23._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
24._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
25._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
26._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
27._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
28._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
29._POUND_2_/A___
____CCGGCC__AA__AACC____AA__
30._POUND_25_/A___
____CCGGCC__AA__AACC____AA__
31._POUND_5_/C___
____CCGGCC__AA__AGCC____AA__
32._NA_286___
TTCCCCGGCCGGAACCAACCGGGGAACC
33._NA_45___
TTCCACGGCCGGAACGAGCTGGGGAACC
34._NA_45___
TTCCACGGCCGGAACGAGCTGGGGAACC
35._NA_45___
TTCCACGGCCGGAACGAGCTGGGGAACC
36._NA_45___
TTCCACGGCCGGAACGAGCTGGGGAACC
37._NA_45___
TTCCACGGCCGGAACGAGCTGGGGAACC
38._NA_45___
TTCCACGGCCGGAACGAGCTGGGGAACC
39._NA_286___
TTCCCCGGCCGGAACCAACCGGGGAACC
40._NA_45___
TTCCACGG__GGAACGAGCTGGGGAACC
41._NA_45___
TTCCACGGCTGGAACGAGCTGGGGAACC
42._NA_670___
TTCCCCGGCCGGAACGAGCCGGGGAACC
43._SPA_16_[COL]___
TTCCACGGCTGGACCGAACTGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCTTGGGGAACCCCTTGGGGTTCCGG
1._NA_710___
AACCTTGGGGAACCCCTTGGGGTTACGG
2._CRU_70___
AACCCTGGGGAACCCCTTGGGGTTCCGG
3._NA_232___
AACCTTGGGGAACCCCTTGGGGTTACGG
4._NA_916___
AACCTTGGGGAACCCCTTGGGGTTCCCG
5._NA_756___
AACCCTGGGGAACCCCTTGGGGTTCCGG
6._CRU_100___
AACC__GGGGAACCCCTTGGGGTTCCCG
7._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
8._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
9._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
10._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
11._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
12._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
13._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
14._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
15._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
16._NA_149___
AACCCCGGGGAACCCCTTGGGGTTCCGG
17._NA_702___
AACCCCGGGGAACCCCTTGGGGTTCCGG
18._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
19._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
20._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
21._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
22._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
23._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
24._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
25._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
26._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
27._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
28._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
29._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
30._POUND_25_/A___
AACCTTGGGGAA__CC__GG______GG
31._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
32._NA_286___
AACCCCGGGGAACCCCCCGGGGTTCCGG
33._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
34._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
35._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
36._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
37._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
38._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
39._NA_286___
AACCCCGGGGAACCCCCCGGGGTTCCGG
40._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
41._NA_45___
AACCTTGTGGAACCCCCCGGGGTTCCCG
42._NA_670___
AACCCTGGGGACCCCCTTGGAGTTCCCG
43._SPA_16_[COL]___
AACCTTGGGGAACCCCTTGGGGTTCCCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
1._NA_710___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
2._CRU_70___
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
3._NA_232___
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
4._NA_916___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
5._NA_756___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
6._CRU_100___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
7._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
8._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
9._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
10._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
11._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
12._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
13._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
14._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
15._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
16._NA_149___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
17._NA_702___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
18._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
19._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
20._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
21._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
22._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
23._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
24._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
25._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
26._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
27._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
28._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
29._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
30._POUND_25_/A___
__CCGG__CC______TT____TTCCAA
31._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
32._NA_286___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
33._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
34._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
35._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
36._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
37._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
38._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
39._NA_286___
CCCCGGCCCCGGGGTT__TTCCTTGGAA
40._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
41._NA_45___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
42._NA_670___
CCCCAGCCCCGGGGTTGTTTCCTTCCAG
43._SPA_16_[COL]___
CCCCAGCCCCGGGGTTGTTTCCTTCGAA

Input profile: IMC_27 RUQ_515

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_710 RUQ_1588

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._CRU_70 RUQ_897

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._NA_232 RUQ_1504

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._NA_916 RUQ_1334

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._NA_756 RUQ_468

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._CRU_100 RUQ_877

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

11._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

12._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

13._POUND_5_/C GC-08-165-4-08

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._POUND_5_/C GC-08-165-4-08

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._POUND_5_/C GC-08-165-4-08

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

16._NA_149 RUQ_801

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._NA_702 RUQ_1587

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._POUND_5_/C GC-08-165-4-08

93.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._POUND_2_/A

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016

20._POUND_2_/A

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

21._POUND_2_/A

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

22._POUND_2_/A

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

23._POUND_2_/A

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

24._POUND_2_/A

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

25._POUND_5_/C

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016

26._POUND_5_/C

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

27._POUND_5_/C

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

28._POUND_5_/C

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

29._POUND_2_/A

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

30._POUND_25_/A

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

31._POUND_5_/C

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

32._NA_286 GC-01-101-5-18

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

33._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

34._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

35._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

36._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

37._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

38._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

39._NA_286 GC-01-101-5-18

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

40._NA_45 GC-01-111-6-08

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

41._NA_45 GC-01-111-6-08

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

42._NA_670 RUQ_1238

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._SPA_16_[COL] RUQ_691

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484