SNP Profiles matching POUND 18

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGTCTGGACCGAGCTAGGGAACC
1._IMC_11___
TTCCACGTCTGGACCGAGTTAGGGAACC
2._IMC_14___
TTCCACGTCTGGACCGAGTTAGGGAACC
3._IMC_6___
TTCCACGTCTGGACCGAGTTAGGGAACC
4._IMC_20___
TTCCACGTCT__ACCGAGCTGGGGAACC
5._IMC_31___
TTCCACTTCTGGACCGAGCTAGGGAACC
6._IMC_11___
____ACGTCT__ACCGAGTT____AA__
7._IMC_11___
____ACGTCT__ACCGAGTT____AA__
8._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
9._IMC_14___
____ACGTCT__AC__AGTT____AA__
10._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
11._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
12._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
13._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
14._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
15._IMC_11___
TTCCACGTCTGGAACGAGTTAGGGAACC
16._IMC_11___
TTCCACGTCTGGAACGAGTTAGGGAACC
17._IMC_11___
TTCCACGTCTGGAACGAGTTAGGGAACC
18._IMC_11___
TTCCACGTCTGGAACGAGTTAGGGAACC
19._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
20._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
21._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
22._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
23._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
24._IMC_67___
TTCCCCGTCTGGACCGAGCTAAGGAACC
25._IMC_11___
TTCCACGTCTGGAACGAGTTAGGGAACC
26._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
27._IMC_14___
TTCCACGTCTGGAACGAGTTAGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCTGGCGACCCCCTTGGGGTTCCCC
1._IMC_11___
AACCCTGGGGAACCCCTTGGGGTTACCC
2._IMC_14___
AACCCTGGGGAACCCCTTGGGGTTACCC
3._IMC_6___
AACCCTGGGGAACCCCTTGGGGTTACCC
4._IMC_20___
AAACCCGGCGACCTCCTTGGGGTTCCCC
5._IMC_31___
AAACCCGTCGACCCCCTTGGGGTTACCC
6._IMC_11___
AACCCTGGGGAA__CC__GG______CC
7._IMC_11___
AACCCTGGGGAA__CC__GG______CC
8._IMC_14___
AACCCTGGGGAACCCCCCGGGGTT__CC
9._IMC_14___
AACCCTGGGGAA__CC__GG______CC
10._IMC_14___
AACCCTGGGGAACCCCCCGGGGTT__CC
11._IMC_14___
AACCCTGGGGAACCCCCCGGGGTT__CC
12._IMC_14___
AACCCTGGGGAACCCCCCGGGGTT__CC
13._IMC_14___
AACCCTGGGGAACCCCCCGGGGTT__CC
14._IMC_14___
AACCCTGGGGAACCCCCCGGGGTT__CC
15._IMC_11___
AACCCTGGGGAACCCCCCGGGGTTACCC
16._IMC_11___
AACCCTGGGGAACCCCCCGGGGTTACCC
17._IMC_11___
AACCCTGGGGAACCCCCCGGGGTTACCC
18._IMC_11___
AACCCTGGGGAACCCCCCGGGGTTACCC
19._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
20._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
21._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
22._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
23._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
24._IMC_67___
AAACCCGTCGACCCCCTTGGGGTTCCCC
25._IMC_11___
AA__CTGGGGAACCCCCCGGGGTTACCC
26._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
27._IMC_14___
AACCCTGGGGAACCCCCCGGGGTTACCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCCTGGGGTTGTTTCCTTGGAG
1._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
2._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
3._IMC_6___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
4._IMC_20___
CCCCAACCCTGGGGTTGTCTCCTTGGAG
5._IMC_31___
CCCCAACCCTGGGGTTGTCTCCTTGGAG
6._IMC_11___
__CCAA__CT______GT____TTCGAG
7._IMC_11___
__CCAA__CT______GT____TTCGAG
8._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
9._IMC_14___
__CCAA__CT______GT____TTCGAG
10._IMC_14___
CCCCAACCCTGGGGTTGT____TTCGAG
11._IMC_14___
CCCCAACCCTGGGGTT______TTCGAG
12._IMC_14___
CCCCAACCCTGGGGTT______TTCGAG
13._IMC_14___
CCCCAACCCTGGGGTT______TTCGAG
14._IMC_14___
CCCCAACCCTGGGGTT______TTCGAG
15._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
16._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
17._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
18._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
19._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
20._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
21._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
22._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
23._IMC_14___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
24._IMC_67___
CCTTAACCCCGGGGTTGTTTCCTTGGAG
25._IMC_11___
CCCCAACCCTGGGGTTGTTTCCTTCGAG
26._IMC_14___
CCCCAACCCTGGGGTT__TTCCTTCGAG
27._IMC_14___
CCCCAACCCTGGGGTT__TTCCTTCGAG

Input profile: IMC_85 RUQ_1666

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_11 RUQ_8

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_14 RUQ_1634

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._IMC_6 RUQ_761

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._IMC_20 RUQ_985

93.9 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._IMC_31 RUQ_1449

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._IMC_11 RUQ_8

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._IMC_11

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

8._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._IMC_14

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

10._IMC_14 GC-03-030-3-09

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

18._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._IMC_14 GC-04-054-3-18

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._IMC_67 RUQ_1056

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._IMC_11 GC-04-029-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

26._IMC_14 GC-03-030-3-09

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

27._IMC_14 GC-03-030-3-09

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484