SNP Profiles matching LV 20 [POU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	AG	GG	AT	CC
1._JA_4_/7_[POU]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
2._JA_4_/7_[POU]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
3._JA_4_/7_[POU]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
4._JA_4_/7_[POU]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
5._JA_4_/7_[POU]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
6._MARPER_18___	__	__	CC	GT	CT	__	AC	__	AA	CC	__	__	AT	__
7._JA_4_/7_[POU]___	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	AG	GG	AT	CC
8._JA_4_/7_[POU]___	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	AG	GG	AT	CC
9._EET_95_[ECU]___	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	GG	GG	AT	CC
10._COCA_3310_/3_[CHA]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
11._COCA_3310_/3_[CHA]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
12._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
13._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
14._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
15._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
16._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
17._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
18._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
19._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
20._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
21._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
22._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
23._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
24._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
25._UF_29___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
26._COCA_3310_/3_[CHA]___	__	__	CC	GT	CT	__	AC	CC	AA	CC	__	__	AT	__
27._UF_29___	__	__	CC	GT	CT	__	AC	__	AA	CC	__	__	AT	__
28._JA_5_/5_[POU]___	TT	CC	CC	GT	CT	GG	AC	CC	AA	CC	AG	AG	AT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CT	GT	GG	CC	CT	CT	TT	GG	AG	TT	CC	GG
1._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
2._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
3._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
4._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
5._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
6._MARPER_18___	AG	AC	CT	GT	CG	CC	__	CT	__	GG	__	__	__	GG
7._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	CT	CT	CT	GG	AG	TT	CC	GG
8._JA_4_/7_[POU]___	AG	AC	CT	GT	CG	CC	CT	CT	CT	GG	AG	TT	CC	GG
9._EET_95_[ECU]___	AG	AC	CT	GT	GG	CC	CC	TT	CT	GT	AG	TT	CC	GG
10._COCA_3310_/3_[CHA]___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
11._COCA_3310_/3_[CHA]___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
12._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
13._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
14._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
15._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
16._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
17._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
18._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
19._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
20._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
21._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
22._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
23._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
24._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
25._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
26._COCA_3310_/3_[CHA]___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
27._UF_29___	AG	AC	CT	GT	CG	AC	__	CT	__	GG	__	__	__	GG
28._JA_5_/5_[POU]___	AG	AC	CT	GT	CG	CC	CT	TT	CT	GT	AG	TT	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	AA	AA	CC	CC	GG	AG	TT	GT	CT	CT	CT	CG
1._JA_4_/7_[POU]___	__	CT	__	AA	__	CC	__	__	__	GT	__	__	CT	CG
2._JA_4_/7_[POU]___	__	CT	__	AA	__	CC	__	__	__	GT	__	__	CT	CG
3._JA_4_/7_[POU]___	__	CT	__	AA	__	CC	__	__	__	GT	__	__	CT	CG
4._JA_4_/7_[POU]___	__	CT	__	AA	__	CC	__	__	__	GT	__	__	CT	CG
5._JA_4_/7_[POU]___	__	CT	__	AA	__	CC	__	__	__	GT	__	__	CT	CG
6._MARPER_18___	GG	CT	__	AA	__	CC	__	__	__	GT	__	__	CT	CG
7._JA_4_/7_[POU]___	GG	CT	AG	AA	CT	CC	GG	AG	TT	GT	TT	CT	CT	CG
8._JA_4_/7_[POU]___	GG	CT	AG	AA	CT	CC	GG	AG	TT	GT	TT	CT	CT	CG
9._EET_95_[ECU]___	GG	TT	__	AG	CC	CC	GG	AG	TT	GT	CT	CT	CT	CG
10._COCA_3310_/3_[CHA]___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
11._COCA_3310_/3_[CHA]___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
12._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
13._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
14._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
15._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
16._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
17._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
18._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
19._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
20._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
21._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
22._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
23._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
24._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
25._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
26._COCA_3310_/3_[CHA]___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
27._UF_29___	__	CT	__	AG	__	CC	__	__	__	GT	__	__	CT	CG
28._JA_5_/5_[POU]___	CG	TT	__	AG	__	CC	GG	AG	TT	GT	CT	CT	CT	CG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._MARPER_18___	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._JA_4_/7_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._EET_95_[ECU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._COCA_3310_/3_[CHA]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._COCA_3310_/3_[CHA]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
25._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
26._COCA_3310_/3_[CHA]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
27._UF_29___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
28._JA_5_/5_[POU]___	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: JA_1_/19_[POU] RUQ_352

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._JA_4_/7_[POU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 7

Dapeng Zhang, 2016

2._JA_4_/7_[POU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 6

Dapeng Zhang, 2016

3._JA_4_/7_[POU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 5

Dapeng Zhang, 2016

4._JA_4_/7_[POU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 3

Dapeng Zhang, 2016

5._JA_4_/7_[POU]

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8856 1

Dapeng Zhang, 2016

6._MARPER_18

95.7 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 11

Dapeng Zhang, 2014

7._JA_4_/7_[POU] GC-08-284-8-56

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._JA_4_/7_[POU] GC-08-284-8-56

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._EET_95_[ECU] RUQ_414

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5230 2 > FP

Dapeng Zhang, 2016

11._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5230 1 > FP

Dapeng Zhang, 2016

12._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 2

Dapeng Zhang, 2016

13._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 3

Dapeng Zhang, 2016

14._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 7

Dapeng Zhang, 2016

15._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 8

Dapeng Zhang, 2016

16._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 10

Dapeng Zhang, 2016

17._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 12

Dapeng Zhang, 2016

18._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 13

Dapeng Zhang, 2016

19._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 15

Dapeng Zhang, 2016

20._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 16

Dapeng Zhang, 2016

21._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 14 > F

Dapeng Zhang, 2016

22._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 4 > FP

Dapeng Zhang, 2016

23._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 6 > FP

Dapeng Zhang, 2016

24._UF_29

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1115 9 > FP

Dapeng Zhang, 2016

25._UF_29

91.7 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

26._COCA_3310_/3_[CHA]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E371 T2

Dapeng Zhang, 2016

27._UF_29

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F454 T8

Dapeng Zhang, 2016

28._JA_5_/5_[POU] RUQ_1539

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484