SNP Profiles matching BE 8

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AA	GG	CT	GG	AA	CC	AG	TT	AG	GG	AA	CC
1._LCT_EEN_162_/S-1010___	TT	CC	AA	GG	CT	GG	AA	CC	AG	TT	AG	GG	AA	CC
2._LCT_EEN_162_/S-1010___	__	__	AA	GG	CT	__	AA	CC	AG	TT	__	__	AA	__
3._LCT_EEN_162_/S-1010___	__	__	AA	GG	CT	__	AA	CC	AG	TT	__	__	AA	__
4._LCT_EEN_162_/S-1010___	__	__	AA	GG	CT	__	AA	CC	AG	TT	__	__	AA	__
5._LCT_EEN_162_/S-1010___	__	__	AA	GG	CT	__	AA	__	AG	CT	__	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	GT	CG	AC	CC	CT	TT	GG	AG	TT	AA	CG
1._LCT_EEN_162_/S-1010___	AA	CC	CC	GT	CG	AC	CC	CT	TT	GG	AG	TT	AA	CG
2._LCT_EEN_162_/S-1010___	AA	CC	CC	GT	CG	AC	__	CT	__	GG	__	__	__	CG
3._LCT_EEN_162_/S-1010___	AA	CC	CC	GT	CG	AC	__	CT	__	GG	__	__	__	CG
4._LCT_EEN_162_/S-1010___	AA	CC	CC	GT	CG	AC	__	CT	__	GG	__	__	__	CG
5._LCT_EEN_162_/S-1010___	AA	CC	CC	GT	CG	AC	__	CT	__	GG	__	__	__	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	CC	TT	GG	GG	TT	TT	TT	CC	TT	CG	GG
1._LCT_EEN_162_/S-1010___	CC	CC	AA	CC	TT	GG	GG	TT	TT	TT	CC	TT	CG	GG
2._LCT_EEN_162_/S-1010___	__	CC	AA	__	TT	__	__	__	TT	__	__	TT	CG	GG
3._LCT_EEN_162_/S-1010___	__	CC	AA	__	TT	__	__	__	TT	__	__	TT	CG	GG
4._LCT_EEN_162_/S-1010___	__	CC	AA	__	TT	__	__	__	TT	__	__	TT	CG	GG
5._LCT_EEN_162_/S-1010___	CC	CC	AA	__	TT	__	__	__	TT	__	__	TT	CG	__

Input profile: LCT_EEN_162_/S-1010 RUQ_70

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LCT_EEN_162_/S-1010 RUQ_686

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LCT_EEN_162_/S-1010 RUQ_70

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._LCT_EEN_162_/S-1010 RUQ_686

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._LCT_EEN_162_/S-1010

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A60 T1

Dapeng Zhang, 2016

5._LCT_EEN_162_/S-1010

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 60 T1

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching BE 8

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Input profile: LCT_EEN_162_/S-1010 RUQ_70

1._LCT_EEN_162_/S-1010 RUQ_686

identical 42 shared markers

2._LCT_EEN_162_/S-1010 RUQ_70

identical 24 shared markers

3._LCT_EEN_162_/S-1010 RUQ_686

identical 24 shared markers

4._LCT_EEN_162_/S-1010

identical 24 shared markers

5._LCT_EEN_162_/S-1010

97.8 % 23 shared markers

identical
42 shared markers

identical
24 shared markers

identical
24 shared markers

identical
24 shared markers

97.8 %
23 shared markers