SNP Profiles matching LCT EEN 37 /F

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 1234567891011121314
_Input profile
AAGGTTCCCCAGCCGGGGCCAGACCCGG
1._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
2._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
3._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
4._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
5._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
6._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
7._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
8._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
9._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
10._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
11._LCT_EEN_37_/F
AAGGTTCCCCAGCC___AGACCCGG
12._POUND_4_/A
AAGGTTCCCCAGCC___AGACCCGG
13._RUQ_153
AAGGTTCCCCAGCC___AGACCCGG
14._RUQ_153
AAGGTTCCCCAGCC___AGACCCGG
15._LCT_EEN_37_/F
AAGGTTCC-AGCC___AGACCCGG
16._LCT_EEN_37_/F
AAGG_CCCCAGCC___AGACCCGG
17._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
18._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
19._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
20._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
21._GC-02-027-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
22._GC-08-160-4-03
AAGGTTCCCCAGCCGGGGCGAGACCCGG
23._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
24._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
25._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
26._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
27._GC-08-161-4-04
AAGGTTCCCCAGCCGGGGCGAGACCCGG
28._GC-02-027-4-03
AAGG_CCCCAGCCGGGGCGAGACCCGG
29._GC-08-159-4-02
AAGGTTCCCCAGCCGGGGCGAGACCCGG
30._LCT_EEN_73_/D
ACGGTTCC-AGCC___AGCCCCGG
31._LCT_EEN_241
AAGGTTCC_AGCC___GGACCCGG
 1516171819202122232425262728
_Input profile
CGCCCCTTGGAAACCGCCTTAACCCCGG
1._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
2._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
3._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
4._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
5._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
6._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
7._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
8._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
9._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
10._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
11._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
12._POUND_4_/A
GGCC_TTGG__CG_TTAA_CC_
13._RUQ_153
GGCC_TTGG__CG_TTAA_CC_
14._RUQ_153
GGCC_TTGG__CG_TTAA_CC_
15._LCT_EEN_37_/F
GGCC_TTGG__CGCCTTAA_CC_
16._LCT_EEN_37_/F
GGCC_TTGG__CG_TTAA_CC_
17._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
18._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
19._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
20._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
21._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
22._GC-08-160-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
23._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
24._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
25._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
26._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
27._GC-08-161-4-04
GGCCCCTTGGAAACCGCGTTAACCCCGG
28._GC-02-027-4-03
GGCCCCTTGGAAACCGCGTTAACCCCGG
29._GC-08-159-4-02
GGCCCCTTGGAAACCGCGTTAACCCCGG
30._LCT_EEN_73_/D
GGCC_TTGG__CGCCTTAA_CC_
31._LCT_EEN_241
GGCC_TTGG__CG_TTAA_CC_
 2930313233343536      
_Input profile
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
1._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
2._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
3._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
4._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
5._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
6._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
7._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
8._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
9._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
10._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
11._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
12._POUND_4_/A
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
13._RUQ_153
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
14._RUQ_153
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
15._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
16._LCT_EEN_37_/F
__GG__CTCGGGX_XX_XX_XX_XX_XX_X
17._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
18._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
19._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
20._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
21._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
22._GC-08-160-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
23._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
24._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
25._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
26._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
27._GC-08-161-4-04
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
28._GC-02-027-4-03
AGTTGGTTCCCTCGGGX_XX_XX_XX_XX_XX_X
29._GC-08-159-4-02
AGTTGG_CCCTCGGGX_XX_XX_XX_XX_XX_X
30._LCT_EEN_73_/D
__GG__CTCCGGX_XX_XX_XX_XX_XX_X
31._LCT_EEN_241
__GG__TTCCGGX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_37_/F RUQ_153

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 11
 Dapeng Zhang, 2016

2._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 10
 Dapeng Zhang, 2016

3._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 9
 Dapeng Zhang, 2016

4._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 5
 Dapeng Zhang, 2016

5._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8404 2
 Dapeng Zhang, 2016

6._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8403 4
 Dapeng Zhang, 2016

7._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 9 > FP
 Dapeng Zhang, 2016

8._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 2 > FP
 Dapeng Zhang, 2016

9._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 14 > F
 Dapeng Zhang, 2016

10._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 10 > F
 Dapeng Zhang, 2016

11._LCT_EEN_37_/F

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 12
 Dapeng Zhang, 2016

12._POUND_4_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8402 4
 Dapeng Zhang, 2016

13._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._LCT_EEN_37_/F RUQ_153

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._LCT_EEN_37_/F

97.8 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 133 T3
 Dapeng Zhang, 2014

16._LCT_EEN_37_/F

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2403 4
 Dapeng Zhang, 2016
Population Assignment: 
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 Dapeng Zhang, 2016

17._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

18._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

19._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

20._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._LCT_EEN_37_/F GC-02-027-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

22._LCT_EEN_37_/F GC-08-160-4-03

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

26._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._LCT_EEN_37_/F GC-08-161-4-04

95.8 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._LCT_EEN_37_/F GC-02-027-4-03

95.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._POUND_4_/A GC-08-159-4-02

95.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._LCT_EEN_73_/D

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B D294 T8
 Dapeng Zhang, 2014

31._LCT_EEN_241

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8841 2
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP144 2TcSNP150 3TcSNP151 4TcSNP193 5TcSNP226
6TcSNP230 7TcSNP242 8TcSNP329 9TcSNP364 10TcSNP448
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP723 20TcSNP731
21TcSNP823 22TcSNP872 23TcSNP878 24TcSNP891 25TcSNP998
26TcSNP999 27TcSNP1060 28TcSNP1063 29TcSNP1111 30TcSNP1126
31TcSNP1253 32TcSNP1309 33TcSNP1439 34TcSNP1442 35TcSNP1458
36TcSNP1484