SNP Profiles matching LCT EEN 62 /S-4

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
1._GDL_3___	TT	CC	CC	TT	CC	GG	AA	CC	AA	__	GG	GG	AA	__
2._MAR_1___	__	__	CC	TT	CC	__	AA	__	AA	CC	__	__	AA	__
3._MAR_20___	__	__	CC	TT	CC	__	AA	__	AA	CC	__	__	AA	__
4._GDL_7___	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
5._MAR_9___	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
6._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
7._DOM_4___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
8._GS_13___	TT	CC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	AA	CC
9._DOM_25___	TT	CC	CC	TT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
10._SIAL_70___	__	__	CC	TT	__	__	AA	CC	AA	CC	__	__	AA	__
11._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
12._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
13._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
14._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
15._CERRO_AZUL_10___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
16._ICS_48___	TT	CC	CC	TT	CC	GG	AA	CC	AG	CT	GG	GG	AA	CC
17._SIC_628___	TT	CC	AA	TT	CC	GG	AA	CC	AA	__	GG	GG	AA	CC
18._DOM_30___	TT	AC	CC	TT	CC	AG	AA	CC	AA	CC	GG	GG	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	TT	TT	GG	CC	TT	TT	TT	GG	GG	TT	CC	GG
1._GDL_3___	__	CC	TT	__	GG	AA	TT	TT	TT	GG	__	TT	__	__
2._MAR_1___	AA	CC	TT	TT	GG	AA	__	TT	__	__	__	__	__	GG
3._MAR_20___	AA	CC	TT	TT	GG	AA	__	TT	__	__	__	__	__	GG
4._GDL_7___	AA	CC	TT	TT	GG	AA	CC	CC	TT	GG	GG	TT	CC	GG
5._MAR_9___	AA	CC	TT	TT	GG	AA	CC	TT	TT	GG	GG	TT	AA	GG
6._CERRO_AZUL_10___	AA	CC	__	TT	CG	CC	TT	TT	TT	GT	GG	TT	CC	GG
7._DOM_4___	AA	CC	__	TT	CG	CC	TT	TT	TT	GT	GG	TT	CC	GG
8._GS_13___	AA	CC	__	TT	GG	AA	CC	TT	TT	GG	GG	TT	CC	CG
9._DOM_25___	AA	CC	TT	TT	GG	CC	CC	CT	TT	GG	GG	TT	AC	GG
10._SIAL_70___	AA	CC	__	TT	CC	__	__	TT	__	GG	__	__	__	GG
11._CERRO_AZUL_10___	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
12._CERRO_AZUL_10___	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
13._CERRO_AZUL_10___	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
14._CERRO_AZUL_10___	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
15._CERRO_AZUL_10___	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
16._ICS_48___	AA	CC	TT	TT	CG	CC	TT	TT	CC	GT	GG	TT	CC	GG
17._SIC_628___	AA	CC	TT	TT	CC	CC	TT	TT	CC	GG	GG	TT	__	GG
18._DOM_30___	AA	CC	__	TT	GG	AA	CC	TT	TT	GG	GG	TT	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
1._GDL_3___	CC	CC	AA	__	CC	GG	__	TT	TT	TT	__	__	GG	AA
2._MAR_1___	CC	CC	AA	__	CC	__	__	__	TT	__	__	CC	GG	AA
3._MAR_20___	CC	CC	AA	__	CC	__	__	__	TT	__	__	CC	GG	AA
4._GDL_7___	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
5._MAR_9___	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
6._CERRO_AZUL_10___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
7._DOM_4___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
8._GS_13___	CC	CC	AA	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
9._DOM_25___	CG	CC	AG	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AG
10._SIAL_70___	__	CC	GG	__	CC	__	__	__	TT	__	__	CC	GG	AA
11._CERRO_AZUL_10___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
12._CERRO_AZUL_10___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
13._CERRO_AZUL_10___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
14._CERRO_AZUL_10___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
15._CERRO_AZUL_10___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
16._ICS_48___	CC	CC	AA	TT	CC	GG	AG	TT	TT	TT	TT	CT	GG	AA
17._SIC_628___	CC	CC	GG	TT	CC	GG	AA	TT	TT	TT	TT	CC	GG	AA
18._DOM_30___	CC	CC	AA	TT	CC	GG	AA	TT	TT	CT	TT	CC	GG	AA

Input profile: LCT_EEN_62_/S-4 RUQ_678

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._GDL_3 RUQ_553

96.8 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._MAR_1

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B188 T1

Dapeng Zhang, 2014

3._MAR_20

95.7 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A B253 T1

Dapeng Zhang, 2014

4._GDL_7 RUQ_554

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._MAR_9 RUQ_557

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._CERRO_AZUL_10 RUQ_936

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._DOM_4 RUQ_544

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._GS_13 RUQ_683

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._DOM_25 RUQ_673

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._SIAL_70

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8353 1

Dapeng Zhang, 2016

11._CERRO_AZUL_10 GC-05-077-2-28

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._CERRO_AZUL_10 GC-05-077-2-28

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

13._CERRO_AZUL_10 GC-05-077-2-28

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

14._CERRO_AZUL_10 GC-05-077-2-28

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

15._CERRO_AZUL_10 GC-05-077-2-28

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._ICS_48 GC-05-078-2-29

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

17._SIC_628 GC-06-15-1-15

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 15, Tree: PL6

Notes: PL6 FP4

18._DOM_30 RUQ_549

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484