SNP Profiles matching LV 20 [POU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGTCTGGACCCAACCGGAGAACC
1._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
2._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
3._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
4._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
5._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
6._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
7._LV_20_[POU]___
____CCGTCT__ACCCAACC____AA__
8._LV_20_[POU]___
TTCCCCGTCTGGACCCAACCGGAGAACC
9._LV_20_[POU]___
TTCCCCGTCTGGACCCAACCGGAGAACC
10._LV_20_[POU]___
TTCCCCGTCTGGACCCAACCGGAGAACC
11._LV_20_[POU]___
TTCCCCGTCTGGACCCAACCGGAGAACC
12._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
13._JA_5_/5_[POU]___
TTCCCCGTCTGGACCCAACCAGAGATCC
14._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
15._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
16._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
17._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
18._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
19._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
20._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
21._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
22._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
23._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
24._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
25._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
26._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
27._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
28._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
29._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
30._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
31._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
32._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
33._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
34._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
35._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
36._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
37._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
38._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
39._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
40._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
41._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
42._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
43._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
44._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
45._EET_95_[ECU]___
____CCGTCT__ACCC__CC____AT__
46._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
47._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
48._EET_95_[ECU]___
____CCGTCT__ACCCAACC____AT__
49._EET_95_[ECU]___
____CCGTCT__AC__AACC____AT__
50._LV_28_[POU]___
TTCCCC__CTGGACCCAACCGGAGATCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGCCTTGTCGCCCTTTCCGTAGTTACGG
1._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
2._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
3._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
4._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
5._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
6._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
7._LV_20_[POU]___
AGCCTTGTCGCC__TT__GT______GG
8._LV_20_[POU]___
AGCCTTGTCGCCCTTTCTGTAGTTACGG
9._LV_20_[POU]___
AGCCTTGTCGCCCTTTCTGTAGTTACGG
10._LV_20_[POU]___
AGCCTTGTCGCCCTTTCTGTAGTTACGG
11._LV_20_[POU]___
AGCCTTGTCGCCCTTTCTGTAGTTACGG
12._EET_95_[ECU]___
AGAC__GTCGCC__TT__GT______GG
13._JA_5_/5_[POU]___
AGACCTGTCGCCCTTTCTGTAGTTACGG
14._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
15._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
16._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
17._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
18._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
19._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
20._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
21._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
22._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
23._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
24._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
25._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
26._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
27._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
28._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
29._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
30._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
31._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
32._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
33._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
34._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
35._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
36._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
37._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
38._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
39._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
40._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
41._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
42._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
43._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
44._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
45._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
46._EET_95_[ECU]___
__ACCTGTCGCC__TT__GT______GG
47._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
48._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT________
49._EET_95_[ECU]___
AGACCTGTCGCC__TT__GT______GG
50._LV_28_[POU]___
AAACCTGTCGCCTTTTCCTTAGTTACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGTTAGTTCCGGAGTTGTTTCTCTCGAG
1._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
2._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
3._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
4._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
5._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
6._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
7._LV_20_[POU]___
__CTAG__CC______GT____CTCGAG
8._LV_20_[POU]___
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
9._LV_20_[POU]___
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
10._LV_20_[POU]___
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
11._LV_20_[POU]___
CGCTAGTTCCGGAGTTGTTTCTCTCGAG
12._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
13._JA_5_/5_[POU]___
CGTTAG__CCGGAGTTGTCTCTCTCGAG
14._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
15._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
16._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
17._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
18._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
19._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
20._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
21._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
22._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
23._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
24._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
25._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
26._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
27._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
28._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
29._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
30._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
31._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
32._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
33._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
34._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
35._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
36._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
37._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
38._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
39._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
40._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
41._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
42._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
43._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
44._EET_95_[ECU]___
__CTAG__CC____________CTCGAG
45._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
46._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
47._EET_95_[ECU]___
__CTAG__CC______GT____CT__AG
48._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
49._EET_95_[ECU]___
__CTAG__CC______GT____CTCGAG
50._LV_28_[POU]___
CGTTAGTTCCGGAGTTGTTTCTCCCGAA

Input profile: LV_20_[POU] RUQ_354

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

2._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

3._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

4._LV_20_[POU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016

5._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._LV_20_[POU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

7._LV_20_[POU]

97.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

8._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._LV_20_[POU] GC-04-027-2-09

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._EET_95_[ECU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 16
 Dapeng Zhang, 2016

13._JA_5_/5_[POU] RUQ_1539

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 10
 Dapeng Zhang, 2016

15._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 9
 Dapeng Zhang, 2016

16._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 7
 Dapeng Zhang, 2016

17._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 6
 Dapeng Zhang, 2016

18._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 5
 Dapeng Zhang, 2016

19._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 4
 Dapeng Zhang, 2016

20._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 3
 Dapeng Zhang, 2016

21._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 2
 Dapeng Zhang, 2016

22._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 1
 Dapeng Zhang, 2016

23._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 17
 Dapeng Zhang, 2016

24._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 14
 Dapeng Zhang, 2016

25._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 13
 Dapeng Zhang, 2016

26._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 11
 Dapeng Zhang, 2016

27._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 10
 Dapeng Zhang, 2016

28._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 9
 Dapeng Zhang, 2016

29._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 8
 Dapeng Zhang, 2016

30._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 7
 Dapeng Zhang, 2016

31._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 6
 Dapeng Zhang, 2016

32._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 12 > F
 Dapeng Zhang, 2016

33._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 11 > F
 Dapeng Zhang, 2016

34._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 1 > FP
 Dapeng Zhang, 2016

35._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 16
 Dapeng Zhang, 2016

36._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 15
 Dapeng Zhang, 2016

37._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 14
 Dapeng Zhang, 2016

38._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 9
 Dapeng Zhang, 2016

39._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 8
 Dapeng Zhang, 2016

40._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 7
 Dapeng Zhang, 2016

41._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 6
 Dapeng Zhang, 2016

42._EET_95_[ECU]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 3
 Dapeng Zhang, 2016

43._EET_95_[ECU] RUQ_414

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

44._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8819 8
 Dapeng Zhang, 2016

45._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 15
 Dapeng Zhang, 2016

46._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 12
 Dapeng Zhang, 2016

47._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8354 2
 Dapeng Zhang, 2016

48._EET_95_[ECU]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3106 5
 Dapeng Zhang, 2016

49._EET_95_[ECU]

91.3 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria EET 95 CATIE
 Dapeng Zhang, 2016

50._LV_28_[POU] RUQ_462

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484