SNP Profiles matching MO 4

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GT	CC	GG	AC	CC	AA	CC	GG	GG	AA	CC
1._IMC_41	__	__	AC	GT	CC	__	__	CC	AA	CC	__	__	AA	__
2._IMC_41	__	__	AC	GT	CC	__	__	CC	AA	CC	__	__	AA	__
3._IMC_41	__	__	AC	GT	CC	__	__	CC	AA	CC	__	__	AA	__
4._IMC_41	__	__	AC	GT	CC	__	AC	__	AA	CC	__	__	AA	__
5._GC-08-275-8-47	TT	CC	AC	GT	CC	GG	__	CC	AA	CC	GG	GG	AA	CC
6._GC-08-275-8-47	TT	CC	AC	GT	CC	GG	__	CC	AA	CC	GG	GG	AA	CC
7._GC-08-275-8-47	TT	CC	AC	GT	CC	GG	__	CC	AA	CC	GG	GG	AA	CC
8._IMC_41	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
9._IMC_41	__	__	AC	GT	CC	__	AA	CC	AA	CC	__	__	AA	__
10._GC-08-275-8-47	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
11._GC-08-275-8-47	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
12._GC-05-119-3-21	TT	CC	AC	GT	CC	GG	__	CC	AA	CC	GG	GG	AA	CC
13._GC-05-071-2-22	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
14._GC-05-071-2-22	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
15._GC-05-119-3-21	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
16._GC-05-119-3-21	TT	CC	AC	GT	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	CC	GT	GG	AC	TT	TT	CC	GG	AG	TT	AA	GG
1._IMC_41	AA	AA	CC	GT	GG	AC	__	TT	__	GG	__	__	__	GG
2._IMC_41	AA	AA	CC	GT	GG	AC	__	TT	__	GG	__	__	__	GG
3._IMC_41	AA	AA	CC	GT	GG	AC	__	TT	__	GG	__	__	__	GG
4._IMC_41	AA	AA	CC	GT	GG	__	__	TT	__	GG	__	__	__	GG
5._GC-08-275-8-47	AA	AA	CC	GT	GG	AC	TT	TT	CT	GG	AG	TT	AA	GG
6._GC-08-275-8-47	AA	AA	CC	GT	GG	AC	TT	TT	CT	GG	AG	TT	AA	GG
7._GC-08-275-8-47	AA	AA	CC	GT	GG	AC	TT	TT	CT	GG	AG	TT	AA	GG
8._IMC_41	AA	AA	CC	GT	GG	AC	__	TT	__	GG	__	__	__	GG
9._IMC_41	AA	AA	CC	GT	GG	AC	__	TT	__	GG	__	__	__	GG
10._GC-08-275-8-47	AA	AA	CC	GT	GG	AC	TT	TT	CT	GG	AG	TT	AA	GG
11._GC-08-275-8-47	AA	AA	CC	GT	GG	AC	TT	TT	CT	GG	AG	TT	AA	GG
12._GC-05-119-3-21	AA	CC	CT	GT	GG	CC	TT	TT	CC	GG	AG	TT	AA	GG
13._GC-05-071-2-22	AA	CC	CT	GT	GG	CC	TT	TT	CC	GG	AG	TT	AA	GG
14._GC-05-071-2-22	AA	CC	CT	GT	GG	CC	TT	TT	CC	GG	AG	TT	AA	GG
15._GC-05-119-3-21	AA	CC	CT	GT	GG	CC	TT	TT	CC	GG	AG	TT	AA	GG
16._GC-05-119-3-21	AA	CC	CT	GT	GG	CC	TT	TT	CC	GG	AG	TT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	AG	TT	TT	CC	CC	CC	CG	GG
1._IMC_41	__	CC	AG	__	CC	__	__	__	TT	__	__	CC	CG	GG
2._IMC_41	__	CC	AG	__	CC	__	__	__	TT	__	__	CC	CG	GG
3._IMC_41	__	CC	AG	__	CC	__	__	__	TT	__	__	CC	CG	GG
4._IMC_41	__	CC	AG	__	CC	__	__	__	TT	__	__	CC	CG	GG
5._GC-08-275-8-47	CC	CC	AG	CC	CC	GG	AG	TT	TT	__	CC	CC	CG	GG
6._GC-08-275-8-47	CC	CC	AG	CC	CC	GG	AG	TT	TT	__	CC	CC	CG	GG
7._GC-08-275-8-47	__	CC	AG	CC	CC	GG	AG	TT	TT	__	CC	CC	CG	GG
8._IMC_41	__	CC	AG	__	CC	__	__	__	TT	__	__	CC	CG	GG
9._IMC_41	__	CC	AG	__	CC	__	__	__	TT	__	__	CC	CG	GG
10._GC-08-275-8-47	CC	CC	AG	CC	CC	GG	AG	TT	TT	__	CC	CC	CG	GG
11._GC-08-275-8-47	CC	CC	AG	CC	CC	GG	AG	TT	TT	__	CC	CC	CG	GG
12._GC-05-119-3-21	CC	CC	AG	CT	CC	GG	AG	TT	TT	__	CT	CT	CG	GG
13._GC-05-071-2-22	CC	CC	AG	CT	CC	GG	AG	TT	TT	__	CT	CT	CG	GG
14._GC-05-071-2-22	CC	CC	AG	CT	CC	GG	AG	TT	TT	__	CT	CT	CG	GG
15._GC-05-119-3-21	CC	CC	AG	CT	CC	GG	AG	TT	TT	__	CT	CT	CG	GG
16._GC-05-119-3-21	CC	CC	AG	CT	CC	GG	AG	TT	TT	__	CT	CT	CG	GG

Input profile: MO_4 RUQ_1529

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_41

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 3

Dapeng Zhang, 2016

2._IMC_41

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 2

Dapeng Zhang, 2016

3._IMC_41

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._IMC_41

identical
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F418 T1

Dapeng Zhang, 2016

5._IMC_41 GC-08-275-8-47

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._IMC_41 GC-08-275-8-47

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._IMC_41 GC-08-275-8-47

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._IMC_41

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 5

Dapeng Zhang, 2016

9._IMC_41

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8847 4

Dapeng Zhang, 2016

10._IMC_41 GC-08-275-8-47

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._IMC_41 GC-08-275-8-47

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._MO_9 GC-05-119-3-21

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

13._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

14._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

15._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

16._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484