SNP Profiles matching MO 4

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 Key

 1234567891011121314
_Input profile
TTCCACGTCCGGACCCAACCGGGGAACC
1._IMC_41
__ACGTCC__CCAACC__AA_
2._IMC_41
__ACGTCC__CCAACC__AA_
3._IMC_41
__ACGTCC__CCAACC__AA_
4._IMC_41
__ACGTCC_AC_AACC__AA_
5._GC-08-275-8-47
TTCCACGTCCGG_CCAACCGGGGAACC
6._GC-08-275-8-47
TTCCACGTCCGG_CCAACCGGGGAACC
7._GC-08-275-8-47
TTCCACGTCCGG_CCAACCGGGGAACC
8._IMC_41
__ACGTCC_AACCAACC__AA_
9._IMC_41
__ACGTCC_AACCAACC__AA_
10._GC-08-275-8-47
TTCCACGTCCGGAACCAACCGGGGAACC
11._GC-08-275-8-47
TTCCACGTCCGGAACCAACCGGGGAACC
12._GC-05-119-3-21
TTCCACGTCCGG_CCAACCGGGGAACC
13._GC-05-071-2-22
TTCCACGTCCGGAACCAACCGGGGAACC
14._GC-05-071-2-22
TTCCACGTCCGGAACCAACCGGGGAACC
15._GC-05-119-3-21
TTCCACGTCCGGAACCAACCGGGGAACC
16._GC-05-119-3-21
TTCCACGTCCGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AAAACCGTGGACTTTTCCGGAGTTAAGG
1._IMC_41
AAAACCGTGGAC_TT_GG___GG
2._IMC_41
AAAACCGTGGAC_TT_GG___GG
3._IMC_41
AAAACCGTGGAC_TT_GG___GG
4._IMC_41
AAAACCGTGG__TT_GG___GG
5._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
6._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
7._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
8._IMC_41
AAAACCGTGGAC_TT_GG___GG
9._IMC_41
AAAACCGTGGAC_TT_GG___GG
10._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
11._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
12._GC-05-119-3-21
AACCCTGTGGCCTTTTCCGGAGTTAAGG
13._GC-05-071-2-22
AACCCTGTGGCCTTTTCCGGAGTTAAGG
14._GC-05-071-2-22
AACCCTGTGGCCTTTTCCGGAGTTAAGG
15._GC-05-119-3-21
AACCCTGTGGCCTTTTCCGGAGTTAAGG
16._GC-05-119-3-21
AACCCTGTGGCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGAGTTTTCCCCCCCGGG
1._IMC_41
_CCAG_CC___TT__CCCGGG
2._IMC_41
_CCAG_CC___TT__CCCGGG
3._IMC_41
_CCAG_CC___TT__CCCGGG
4._IMC_41
_CCAG_CC___TT__CCCGGG
5._GC-08-275-8-47
CCCCAGCCCCGGAGTTTT_CCCCCGGG
6._GC-08-275-8-47
CCCCAGCCCCGGAGTTTT_CCCCCGGG
7._GC-08-275-8-47
_CCAGCCCCGGAGTTTT_CCCCCGGG
8._IMC_41
_CCAG_CC___TT__CCCGGG
9._IMC_41
_CCAG_CC___TT__CCCGGG
10._GC-08-275-8-47
CCCCAGCCCCGGAGTTTT_CCCCCGGG
11._GC-08-275-8-47
CCCCAGCCCCGGAGTTTT_CCCCCGGG
12._GC-05-119-3-21
CCCCAGCTCCGGAGTTTT_CTCTCGGG
13._GC-05-071-2-22
CCCCAGCTCCGGAGTTTT_CTCTCGGG
14._GC-05-071-2-22
CCCCAGCTCCGGAGTTTT_CTCTCGGG
15._GC-05-119-3-21
CCCCAGCTCCGGAGTTTT_CTCTCGGG
16._GC-05-119-3-21
CCCCAGCTCCGGAGTTTT_CTCTCGGG

Input profile: MO_4 RUQ_1529

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_41

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

2._IMC_41

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

3._IMC_41

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._IMC_41

identical
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

5._IMC_41 GC-08-275-8-47

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._IMC_41 GC-08-275-8-47

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._IMC_41 GC-08-275-8-47

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._IMC_41

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

9._IMC_41

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

10._IMC_41 GC-08-275-8-47

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._IMC_41 GC-08-275-8-47

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._MO_9 GC-05-119-3-21

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

13._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484