SNP Profiles matching PA 195 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGGCCGGACCCAGCCGGGGAACC
1._EET_272_[ECU]___
____CCGGCC____CCAGCC____AA__
2._EET_272_[ECU]___
TTCCCCGGCCGG__CCAGCCGGGGAACC
3._EET_272_[ECU]___
____CCGGCC__AACCAGCC____AA__
4._PA_150_[PER]___
____CCGGCC__AACCAGCC____AA__
5._PA_150_[PER]___
____CCGGCC__AACCAGCC____AA__
6._PA_150_[PER]___
____CCGGCC__AACCAGCC____AA__
7._PA_150_[PER]___
____CCGGCC__AACCAGCC____AA__
8._EQX_/O_[CHA]___
____CCGGCC__CCCCAGCC____AA__
9._EET_272_[ECU]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
10._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
11._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
12._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
13._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
14._EQX_/O_[CHA]___
TTCCCCGGCCGGCCCCAGCCGGGGAACC
15._PA_56_[PER]___
____CCGGCC__ACCCAGCC____AA__
16._PA_56_[PER]___
____CCGGCC__ACCCAGCC____AA__
17._PA_128_[PER]___
____ACGGCC__AC__AGCC____AA__
18._PA_56_[PER]___
TTCCCCGGCCGGACCCAGCCGGGGAACC
19._PA_56_[PER]___
____CCGGCC__AACCAGCC____AA__
20._PA_56_[PER]___
____CCGGCC__AACCAGCC____AA__
21._PA_56_[PER]___
____CCGGCC__AACCAGCC____AA__
22._PA_56_[PER]___
____CCGGCC__AACCAGCC____AA__
23._PA_279_[PER]___
TTCCCCGGCTGGCCCCGGCCGGGGAACC
24._PA_56_[PER]___
____CCGGCC__AACCAGCC________
25._PA_56_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
26._PA_56_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
27._PA_56_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._PA_56_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
29._PA_124_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
30._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
31._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
32._PA_56_[PER]___
TTCCCCGGCCGGAACCAGCCGGGG__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACCCGTCGCCCTTTTTGGAGTTAAGG
1._EET_272_[ECU]___
AAACCCGTCGCC__TT__GG______GG
2._EET_272_[ECU]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
3._EET_272_[ECU]___
AAACCCGTCGCC__TT__GG______GG
4._PA_150_[PER]___
AAACCCGTCGCC__TT__GG______GG
5._PA_150_[PER]___
AAACCCGTCGCC__TT__GG______GG
6._PA_150_[PER]___
AAACCCGTCGCC__TT__GG______GG
7._PA_150_[PER]___
AAACCCGTCGCC__TT__GG______GG
8._EQX_/O_[CHA]___
AAACCCGTCGCC__TT__GG______GG
9._EET_272_[ECU]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
10._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
11._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
12._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
13._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
14._EQX_/O_[CHA]___
AAACCCGTCGCCCCTTCTGGAGTTAAGG
15._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
16._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
17._PA_128_[PER]___
AAAACCGTCGCC__TT__________GG
18._PA_56_[PER]___
AAACCTGTCGCCTTTTCTGGAGTTAAGG
19._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
20._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
21._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
22._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
23._PA_279_[PER]___
AGACCTGTGGCCCTTTTTGGAGTTAAGG
24._PA_56_[PER]___
AAACCTGTCGCC__TT__GG______GG
25._PA_56_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
26._PA_56_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
27._PA_56_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
28._PA_56_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
29._PA_124_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
30._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
31._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
32._PA_56_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
1._EET_272_[ECU]___
__CCAG__CC______TT____CCGGGG
2._EET_272_[ECU]___
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
3._EET_272_[ECU]___
__CCAG__CC______TT____CCGGGG
4._PA_150_[PER]___
__CCAG__CC______TT____CCGGGG
5._PA_150_[PER]___
__CCAG__CC______TT____CCGGGG
6._PA_150_[PER]___
__CCAG__CC______TT____CCGGGG
7._PA_150_[PER]___
__CCAG__CC______TT____CCGGGG
8._EQX_/O_[CHA]___
__CC____CC______TT____CCGGGG
9._EET_272_[ECU]___
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
10._PA_150_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
11._PA_150_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
12._PA_150_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
13._PA_150_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
14._EQX_/O_[CHA]___
CCCC__CCCCGGGGTTTTTTCCCCGGGG
15._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
16._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
17._PA_128_[PER]___
CCCCAG__CC______TT____CTGGGG
18._PA_56_[PER]___
CCCCAGCCCCGGGGTTTTCTCCCTCGGG
19._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
20._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
21._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
22._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
23._PA_279_[PER]___
CCCCAGCCCCGGGGTTTTCTCCCCGGGG
24._PA_56_[PER]___
__CCAG__CC______TT____CTCGGG
25._PA_56_[PER]___
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
26._PA_56_[PER]___
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
27._PA_56_[PER]___
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
28._PA_56_[PER]___
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
29._PA_124_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
30._PA_195_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
31._PA_195_[PER]___
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
32._PA_56_[PER]___
CCCCAGCTCCGGGGTTTTTTCCCTCGGG

Input profile: MOQ_6_/95 RUQ_1436

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

4._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

5._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

6._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

7._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

8._EQX_/O_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

9._EET_272_[ECU] GC-03-032-3-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EQX_/O_[CHA] GC-07-077-4-21

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_56_[PER] RUQ_32

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._PA_56_[PER]

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

17._PA_128_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D272 T2
 Dapeng Zhang, 2014

18._PA_56_[PER] RUQ_32

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

20._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

21._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

22._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

23._PA_279_[PER] RUQ_1119

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PA_56_[PER]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016

25._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

28._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

29._PA_124_[PER] RUQ_1576

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._PA_56_[PER] NA

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484