SNP Profiles matching NA 149

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._NA_702___
TTCCCCGGCCGGAACCAACCGGGGAACC
2._NA_286___
____CCGGCC__AACCAACC____AA__
3._NA_286___
____CCGGCC__AACCAACC____AA__
4._NA_286___
____CCGGCC__AACCAACC____AA__
5._NA_756___
TTCCCCGGCCGGAACCAACCGGGGAACC
6._NA_286___
TTCCCCGGCCGGAACCAACCGGGGAACC
7._NA_286___
TTCCCCGGCCGGAACCAACCGGGGAACC
8._CRU_70___
TTCCCCGGCCGGAACCAACCGGGGAACC
9._CRU_100___
TTCCCCGGCCGGAACCAACCGGGGAACC
10._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
11._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
12._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
13._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
14._POUND_5_/C___
____CCGGCC__AA__AGCC____AA__
15._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
16._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
17._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
18._POUND_5_/C___
TT__CCGGCCGGAACCAGCCGGGGAACC
19._IMC_27___
TTCCCCGGCCGGAACCAGCCGGGGAACC
20._NA_710___
TTCCCCGGCCGGAACCAACCGGGGAACC
21._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
22._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
23._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
24._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
25._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
26._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
27._NA_916___
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._NA_232___
TTCCCCGGCCGGAACCAACCGGGGAACC
29._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
30._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
31._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
32._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
33._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
34._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
35._POUND_2_/A___
____CCGGCC__AA__AACC____AA__
36._POUND_25_/A___
____CCGGCC__AA__AACC____AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCCGGGGAACCCCTTGGGGTTCCGG
1._NA_702___
AACCCCGGGGAACCCCTTGGGGTTCCGG
2._NA_286___
AACCCCGGGGAA__CC__GG______GG
3._NA_286___
AACCCCGGGGAA__CC__GG______GG
4._NA_286___
AACCCCGGGGAA__CC__GG______GG
5._NA_756___
AACCCTGGGGAACCCCTTGGGGTTCCGG
6._NA_286___
AACCCCGGGGAACCCCCCGGGGTTCCGG
7._NA_286___
AACCCCGGGGAACCCCCCGGGGTTCCGG
8._CRU_70___
AACCCTGGGGAACCCCTTGGGGTTCCGG
9._CRU_100___
AACC__GGGGAACCCCTTGGGGTTCCCG
10._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
11._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
12._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
13._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
14._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
15._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
16._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
17._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
18._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
19._IMC_27___
AACCTTGGGGAACCCCTTGGGGTTCCGG
20._NA_710___
AACCTTGGGGAACCCCTTGGGGTTACGG
21._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
22._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
23._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
24._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
25._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
26._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
27._NA_916___
AACCTTGGGGAACCCCTTGGGGTTCCCG
28._NA_232___
AACCTTGGGGAACCCCTTGGGGTTACGG
29._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
30._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
31._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
32._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
33._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
34._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
35._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
36._POUND_25_/A___
AACCTTGGGGAA__CC__GG______GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
1._NA_702___
CCCC__GGCCCCGGGGTTTTTTCCTTGG
2._NA_286___
__CC__GG__CC______TT____TTGG
3._NA_286___
__CC__GG__CC______TT____TTGG
4._NA_286___
__CC__GG__CC____________TTGG
5._NA_756___
CCCC__GGCCCCGGGGTTTTTTCCTTGG
6._NA_286___
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
7._NA_286___
CCCCGGGGCCCCGGGGTT__TTCCTTGG
8._CRU_70___
CCCC__GGCCCCGGGGTTTTTTCCTTCG
9._CRU_100___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
10._POUND_5_/C___
__CC__GG__CC______TT____TTGG
11._POUND_5_/C___
__CC__GG__CC______TT____TTGG
12._POUND_5_/C___
__CC__GG__CC______TT____TTGG
13._POUND_5_/C___
__CC__GG__CC______TT____TTGG
14._POUND_5_/C___
__CC__GG__CC______TT____TTGG
15._POUND_5_/C___
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
16._POUND_5_/C___
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
17._POUND_5_/C___
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
18._POUND_5_/C___
CCCCGGGGCCCCGGGGTTTTTTCCTTGG
19._IMC_27___
CCCC__AGCCCCGGGGTTTTTTCCTTCG
20._NA_710___
CCCC__AGCCCCGGGGTTTTTTCCTTCG
21._POUND_2_/A___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
22._POUND_2_/A___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
23._POUND_2_/A___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
24._POUND_2_/A___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
25._POUND_2_/A___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
26._POUND_2_/A___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
27._NA_916___
CCCCGGGGCCCCGGGGTTTTTTCCTTCC
28._NA_232___
CCCC__AGCCCCGGGGTTTTTTCCTTCC
29._POUND_2_/A___
__CC__GG__CC______TT____TTCC
30._POUND_2_/A___
__CC__GG__CC______TT____TTCC
31._POUND_2_/A___
__CC__GG__CC______TT____TTCC
32._POUND_2_/A___
__CC__GG__CC______TT____TTCC
33._POUND_2_/A___
__CC__GG__CC______TT____TTCC
34._POUND_2_/A___
__CC__GG__CC______TT____TTCC
35._POUND_2_/A___
__CC__GG__CC______TT____TTCC
36._POUND_25_/A___
__CC__GG__CC______TT____TTCC
 43              
_Input profile
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._NA_702___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._NA_286___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._NA_286___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._NA_286___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._NA_756___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._NA_286___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._NA_286___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._CRU_70___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._CRU_100___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._POUND_5_/C___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._IMC_27___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._NA_710___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._NA_916___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._NA_232___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._POUND_2_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._POUND_25_/A___
AAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: NA_149 RUQ_801

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_702 RUQ_1587

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_286

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

3._NA_286

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

4._NA_286

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016

5._NA_756 RUQ_468

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._NA_286 GC-01-101-5-18

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._NA_286 GC-01-101-5-18

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

8._CRU_70 RUQ_897

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._CRU_100 RUQ_877

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016

11._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

12._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

13._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

14._POUND_5_/C

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

15._POUND_5_/C GC-08-165-4-08

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._POUND_5_/C GC-08-165-4-08

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._POUND_5_/C GC-08-165-4-08

95.3 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._IMC_27 RUQ_515

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_710 RUQ_1588

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

93 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._NA_916 RUQ_1334

93 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._NA_232 RUQ_1504

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016

30._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

31._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

32._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

33._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

34._POUND_2_/A

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

35._POUND_2_/A

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

36._POUND_25_/A

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484