SNP Profiles matching NA 399

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	CC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AT	CG
1._ICS_6___	CT	AC	CC	GT	CC	GG	AA	CC	GG	CC	GG	AG	AT	CG
2._PA_205_[PER]___	__	__	CC	GT	CC	__	AA	CC	GG	CC	__	__	AT	__
3._ICS_6___	__	__	CC	GT	CC	__	AA	CC	GG	CC	__	__	AT	__
4._ICS_6___	__	__	CC	GT	CC	__	AA	__	GG	CC	__	__	AT	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	TT	CC	AA	CC	CT	TT	GG	GG	TT	CC	CC
1._ICS_6___	AA	CC	CT	TT	CC	AA	CC	CT	TT	GG	GG	TT	CC	CC
2._PA_205_[PER]___	AA	CC	CT	TT	CC	AA	__	CT	__	__	__	__	__	CC
3._ICS_6___	AA	CC	CT	TT	CC	AC	__	CT	__	GG	__	__	__	CC
4._ICS_6___	AA	CC	CT	TT	CC	AC	__	CT	__	GG	__	__	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	CC	AA	CC	TT	AG	AA	TT	TT	TT	TT	CG	AA	X_X
1._ICS_6___	CC	CC	AA	CC	TT	AG	AA	TT	TT	TT	TT	CG	AA	X_X
2._PA_205_[PER]___	CC	CC	AA	CC	__	__	__	TT	__	__	TT	GG	AA	X_X
3._ICS_6___	__	CC	AA	CC	__	__	__	TT	__	__	TT	CG	AG	X_X
4._ICS_6___	__	CC	AA	CC	__	__	__	TT	__	__	TT	GG	AA	X_X

Input profile: NA_399 RUQ_1572

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_6 RUQ_721

identical
41 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_205_[PER]

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 715

Dapeng Zhang, 2014

3._ICS_6 RUQ_721

95.8 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._ICS_6

95.7 %
23 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484