SNP Profiles matching BE 8

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._NA_232___
TTCCCCGGCCGGAACCAACCGGGGAACC
2._IMC_27___
TTCCCCGGCCGGAACCAGCCGGGGAACC
3._CRU_70___
TTCCCCGGCCGGAACCAACCGGGGAACC
4._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
5._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
6._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
7._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
8._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
9._POUND_2_/A___
____CCGGCC__AACCAACC____AA__
10._POUND_2_/A___
____CCGGCC__AA__AACC____AA__
11._POUND_25_/A___
____CCGGCC__AA__AACC____AA__
12._NA_756___
TTCCCCGGCCGGAACCAACCGGGGAACC
13._CRU_100___
TTCCCCGGCCGGAACCAACCGGGGAACC
14._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
15._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
16._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
17._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
18._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
19._POUND_2_/A___
TTCCCCGGCCGGAACCAACCGGGGAACC
20._NA_149___
TTCCCCGGCCGGAACCAACCGGGGAACC
21._NA_702___
TTCCCCGGCCGGAACCAACCGGGGAACC
22._NA_916___
TTCCCCGGCCGGAACCAGCCGGGGAACC
23._NA_286___
____CCGGCC__AACCAACC____AA__
24._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
25._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
26._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
27._POUND_5_/C___
____CCGGCC__AACCAGCC____AA__
28._NA_286___
____CCGGCC__AACCAACC____AA__
29._NA_286___
TTCCCCGGCCGGAACCAACCGGGGAACC
30._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
31._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
32._POUND_5_/C___
TTCCCCGGCCGGAACCAGCCGGGGAACC
33._NA_286___
TTCCCCGGCCGGAACCAACCGGGGAACC
34._POUND_5_/C___
TT__CCGGCCGGAACCAGCCGGGGAACC
35._NA_286___
____CCGGCC__AACCAACC____AA__
36._POUND_5_/C___
____CCGGCC__AA__AGCC____AA__
37._SPA_16_[COL]___
TTCCACGGCTGGACCGAACTGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCTTGGGGAACCCCTTGGGGTTACGG
1._NA_232___
AACCTTGGGGAACCCCTTGGGGTTACGG
2._IMC_27___
AACCTTGGGGAACCCCTTGGGGTTCCGG
3._CRU_70___
AACCCTGGGGAACCCCTTGGGGTTCCGG
4._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
5._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
6._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
7._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
8._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
9._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
10._POUND_2_/A___
AACCTTGGGGAA__CC__GG______GG
11._POUND_25_/A___
AACCTTGGGGAA__CC__GG______GG
12._NA_756___
AACCCTGGGGAACCCCTTGGGGTTCCGG
13._CRU_100___
AACC__GGGGAACCCCTTGGGGTTCCCG
14._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
15._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
16._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
17._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
18._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
19._POUND_2_/A___
AACCTTGGGGAACCCCCCGGGGTTCCGG
20._NA_149___
AACCCCGGGGAACCCCTTGGGGTTCCGG
21._NA_702___
AACCCCGGGGAACCCCTTGGGGTTCCGG
22._NA_916___
AACCTTGGGGAACCCCTTGGGGTTCCCG
23._NA_286___
AACCCCGGGGAA__CC__GG______GG
24._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
25._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
26._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
27._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
28._NA_286___
AACCCCGGGGAA__CC__GG______GG
29._NA_286___
AACCCCGGGGAACCCCCCGGGGTTCCGG
30._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
31._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
32._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
33._NA_286___
AACCCCGGGGAACCCCCCGGGGTTCCGG
34._POUND_5_/C___
AACCCTGGGGAACCCCCCGGGGTTCCGG
35._NA_286___
AACCCCGGGGAA__CC__GG______GG
36._POUND_5_/C___
AACCCTGGGGAA__CC__GG______GG
37._SPA_16_[COL]___
AACCTTGGGGAACCCCTTGGGGTTCCCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
1._NA_232___
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
2._IMC_27___
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
3._CRU_70___
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
4._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
5._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
6._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
7._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
8._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
9._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
10._POUND_2_/A___
__CCGG__CC______TT____TTCCAA
11._POUND_25_/A___
__CCGG__CC______TT____TTCCAA
12._NA_756___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
13._CRU_100___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
14._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
15._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
16._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
17._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
18._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
19._POUND_2_/A___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
20._NA_149___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
21._NA_702___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
22._NA_916___
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
23._NA_286___
__CCGG__CC______TT____TTGGAA
24._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
25._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
26._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
27._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
28._NA_286___
__CCGG__CC______TT____TTGGAA
29._NA_286___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
30._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
31._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
32._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
33._NA_286___
CCCCGGCCCCGGGGTT__TTCCTTGGAA
34._POUND_5_/C___
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
35._NA_286___
__CCGG__CC____________TTGGAA
36._POUND_5_/C___
__CCGG__CC______TT____TTGGAA
37._SPA_16_[COL]___
CCCCAGCCCCGGGGTTGTTTCCTTCGAA

Input profile: NA_710 RUQ_1588

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_232 RUQ_1504

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_27 RUQ_515

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._CRU_70 RUQ_897

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016

5._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

6._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

7._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

9._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

10._POUND_2_/A

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

11._POUND_25_/A

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

12._NA_756 RUQ_468

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._CRU_100 RUQ_877

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

18._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

19._POUND_2_/A GC-01-093-5-10

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._NA_149 RUQ_801

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._NA_702 RUQ_1587

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_916 RUQ_1334

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_286

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

24._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016

25._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

26._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

27._POUND_5_/C

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

28._NA_286

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

29._NA_286 GC-01-101-5-18

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

30._POUND_5_/C GC-08-165-4-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._POUND_5_/C GC-08-165-4-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

33._NA_286 GC-01-101-5-18

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

34._POUND_5_/C GC-08-165-4-08

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

35._NA_286

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016

36._POUND_5_/C

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

37._SPA_16_[COL] RUQ_691

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484