SNP Profiles matching PA 121 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGTCCGGAACCAACCGGGGAACC
1._PA_121_[PER]___
TTCCACGTCCGGAACCAACCGGGGAACC
2._PA_121_[PER]___
TTCCACGTCCGGAACCAACCGGGGAACC
3._PA_121_[PER]___
TTCCACGT__GGAACCAACCGGGGAACC
4._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
5._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
6._ICS_1___
____ACGTCC__AACCAACC____AA__
7._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
8._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
9._PA_121_[PER]___
____ACGTCC__AACCAACC____AA__
10._PA_121_[PER]___
____ACGT____AACCAACC____AA__
11._PA_121_[PER]___
____ACGTCC__AA__AACC____AA__
12._PA_289_[PER]___
TTCCACGTCTGGAACCGGCCGGGGAACC
13._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
14._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
15._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
16._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
17._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
18._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
19._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
20._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
21._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
22._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
23._UF_667___
____ACGTCT__AACCAGCC____AA__
24._PA_299_[PER]___
TTCCACGGCCGGAACCGGCCGGGGAACC
25._MO_9___
TTCCACGTCCGGAACCAACCGGGGAACC
26._MO_9___
TTCCACGTCCGGAACCAACCGGGGAACC
27._MO_9___
TTCCACGTCCGGAACCAACCGGGGAACC
28._MO_9___
TTCCACGTCCGGAACCAACCGGGGAACC
29._MO_9___
TTCCACGTCCGG__CCAACCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAACTGGCGCCTTTTCCGGAGTTAAGG
1._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
2._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
3._PA_121_[PER]___
AGAACTGGCGCCTTTTCCGGAGTTAAGG
4._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
5._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
6._ICS_1___
AGAACTGGCGCC__TT__GG______GG
7._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
8._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
9._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
10._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
11._PA_121_[PER]___
AGAACTGGCGCC__TT__GG______GG
12._PA_289_[PER]___
AAAACTGGCGCCTTTTCCGGAGTTAAGG
13._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
15._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
16._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
19._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
20._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
21._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
22._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
23._UF_667___
AGAACCGGCGCC__TT__GG______GG
24._PA_299_[PER]___
AAACCTGGCGCCTTTTCTGGAGTTAAGG
25._MO_9___
AACCCTGTGGCCTTTTCCGGAGTTAAGG
26._MO_9___
AACCCTGTGGCCTTTTCCGGAGTTAAGG
27._MO_9___
AACCCTGTGGCCTTTTCCGGAGTTAAGG
28._MO_9___
AACCCTGTGGCCTTTTCCGGAGTTAAGG
29._MO_9___
AACCCTGTGGCCTTTTCCGGAGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
1._PA_121_[PER]___
CCCCAGCCCCGGGGTTTT__CTCTGGGG
2._PA_121_[PER]___
CCCCAGCCCCGGGGTTTT__CTCTGGGG
3._PA_121_[PER]___
CCCCAGCCCCGGGGTTTT__CTCTGGGG
4._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
5._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
6._ICS_1___
__CCAG__CC______TT____CTGGGG
7._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
8._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
9._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
10._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
11._PA_121_[PER]___
__CCAG__CC______TT____CTGGGG
12._PA_289_[PER]___
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
13._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
14._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
15._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
16._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
17._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
18._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
19._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
20._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
21._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
22._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
23._UF_667___
__CCAG__CC______TT____CTCGGG
24._PA_299_[PER]___
CCCCAGCCCCGGGGTTTTCCCTCTCCGG
25._MO_9___
CCCCAGCTCCGGAGTTTT__CTCTCGGG
26._MO_9___
CCCCAGCTCCGGAGTTTT__CTCTCGGG
27._MO_9___
CCCCAGCTCCGGAGTTTT__CTCTCGGG
28._MO_9___
CCCCAGCTCCGGAGTTTT__CTCTCGGG
29._MO_9___
CCCCAGCTCCGGAGTTTT__CTCTCGGG

Input profile: PA_121_[PER] RUQ_1059

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_121_[PER] GC-05-011-1-11

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

4._PA_121_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

5._PA_121_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

6._ICS_1

identical
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

7._PA_121_[PER] RUQ_1059

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_121_[PER]

identical
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

9._PA_121_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

10._PA_121_[PER]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

11._PA_121_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

12._PA_289_[PER] RUQ_952

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._UF_667

91.7 %
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

24._PA_299_[PER] RUQ_1621

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

29._MO_9 GC-05-119-3-21

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484