SNP Profiles matching PA 195 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCCGGCCCCGGCCGGGGAACC
1._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
2._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
3._PA_195_[PER]___
____ACGGCC__CCCCGGCC____AA__
4._PA_195_[PER]___
____ACGGCC__CCCCGGCC____AA__
5._PA_195_[PER]___
____ACGGCC__CCCCGGCC____AA__
6._PA_195_[PER]___
____ACGGCC__CCCCGGCC____AA__
7._PA_195_[PER]___
____ACGGCC__CCCCGGCC____AA__
8._PA_195_[PER]___
____ACGGCC__CCCCGGCC____AA__
9._PA_195_[PER]___
____ACGGCC__CC__GGCC____AA__
10._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
11._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
12._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
13._PA_195_[PER]___
TTCCACGGCCGGCCCCGGCCGGGGAACC
14._PA_115_[PER]___
____ACGGCC__AC__GGCC____AA__
15._PA_165_[PER]___
____ACGGCC__AC__GGCC____AA__
16._EET_272_[ECU]___
TTCCCCGGCCGG__CCAGCCGGGGAACC
17._PA_187_[PER]___
____ACGGCC__CCCCGGCC____AA__
18._EQX_/O_[CHA]___
TTCCCCGGCCGGCCCCAGCCGGGGAACC
19._PA_189_[PER]___
____ACGGCC__CC__GGCC____AA__
20._EET_272_[ECU]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
21._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
22._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
23._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
24._PA_150_[PER]___
TTCCCCGGCCGGAACCAGCCGGGGAACC
25._MOQ_6_/95___
TTCCCCGGCCGGACCCAGCCGGGGAACC
26._PA_56_[PER]___
TTCCCCGGCCGGACCCAGCCGGGGAACC
27._IMC_41___
TTCCACGTCCGG__CCAACCGGGGAACC
28._IMC_41___
TTCCACGTCCGG__CCAACCGGGGAACC
29._IMC_41___
TTCCACGTCCGG__CCAACCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAACCGGCGCCTTTTCTGGAGTTAAGG
1._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
2._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
3._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
4._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
5._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
6._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
7._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
8._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
9._PA_195_[PER]___
AAAACCGGCGCC__TT__GG______GG
10._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
11._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
12._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
13._PA_195_[PER]___
AAAACCGGCGCCTTTTCTGGAGTTAAGG
14._PA_115_[PER]___
AAAACCGGGGCC__TT__________GG
15._PA_165_[PER]___
AAACCCGGCGCC__TT__________GG
16._EET_272_[ECU]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
17._PA_187_[PER]___
AGAACCGTCCCC__TT__________GG
18._EQX_/O_[CHA]___
AAACCCGTCGCCCCTTCTGGAGTTAAGG
19._PA_189_[PER]___
AGAACCGTCCCC__TT__________GG
20._EET_272_[ECU]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
21._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
22._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
23._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
24._PA_150_[PER]___
AAACCCGTCGCCCTTTCTGGAGTTAAGG
25._MOQ_6_/95___
AAACCCGTCGCCCTTTTTGGAGTTAAGG
26._PA_56_[PER]___
AAACCTGTCGCCTTTTCTGGAGTTAAGG
27._IMC_41___
AAAACCGTGGACTTTTCTGGAGTTAAGG
28._IMC_41___
AAAACCGTGGACTTTTCTGGAGTTAAGG
29._IMC_41___
AAAACCGTGGACTTTTCTGGAGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGAGCCCCGGGGTTTTTTCCCCCG
1._PA_195_[PER]___
CCCC__AGCCCCGGGGTTTTTTCCCCCG
2._PA_195_[PER]___
CCCC__AGCCCCGGGGTTTTTTCCCCCG
3._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
4._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
5._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
6._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
7._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
8._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
9._PA_195_[PER]___
__CC__AG__CC______TT____CCCG
10._PA_195_[PER]___
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
11._PA_195_[PER]___
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
12._PA_195_[PER]___
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
13._PA_195_[PER]___
CCCCGGAGCTCCGGGGTTTTTTCCCCCG
14._PA_115_[PER]___
CCCC__GG__CC______TT____CCCG
15._PA_165_[PER]___
CCCC__AG__CC______TT____CCCG
16._EET_272_[ECU]___
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
17._PA_187_[PER]___
CCCC__AG__CC______TT____CTCG
18._EQX_/O_[CHA]___
CCCCGG__CCCCGGGGTTTTTTCCCCGG
19._PA_189_[PER]___
CCCC__AG__CC______TT____CTCG
20._EET_272_[ECU]___
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
21._PA_150_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
22._PA_150_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
23._PA_150_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
24._PA_150_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCCGG
25._MOQ_6_/95___
CCCC__AGCCCCGGGGTTTTTTCCCCGG
26._PA_56_[PER]___
CCCC__AGCCCCGGGGTTTTCTCCCTCG
27._IMC_41___
CCCCAGAGCCCCGGAGTTTT__CCCCCG
28._IMC_41___
CCCCAGAGCCCCGGAGTTTT__CCCCCG
29._IMC_41___
__CCAGAGCCCCGGAGTTTT__CCCCCG
 43              
_Input profile
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_195_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_115_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_165_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._EET_272_[ECU]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_187_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._EQX_/O_[CHA]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_189_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._EET_272_[ECU]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._PA_150_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._PA_150_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._PA_150_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._PA_150_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._MOQ_6_/95___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._PA_56_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._IMC_41___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._IMC_41___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._IMC_41___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_124_[PER] RUQ_1576

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_195_[PER] RUQ_1642

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_195_[PER] RUQ_1642

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016

4._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

5._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

6._PA_195_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

7._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_195_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

10._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._PA_195_[PER] GC-05-166-4-19

98.8 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_115_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 324
 Dapeng Zhang, 2014

15._PA_165_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 714
 Dapeng Zhang, 2014

16._EET_272_[ECU] GC-03-032-3-11

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._PA_187_[PER]

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 737
 Dapeng Zhang, 2014

18._EQX_/O_[CHA] GC-07-077-4-21

91.7 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_189_[PER]

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 489
 Dapeng Zhang, 2014

20._EET_272_[ECU] GC-03-032-3-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

90.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._MOQ_6_/95 RUQ_1436

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

26._PA_56_[PER] RUQ_32

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._IMC_41 GC-08-275-8-47

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._IMC_41 GC-08-275-8-47

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._IMC_41 GC-08-275-8-47

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484