SNP Profiles matching PA 70 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAAGGCCGGAACCAGCCGGGGAACC
1._PA_70_[PER]___
____AAGGCC__AACCAGCC____AA__
2._POUND_4_/A___
____AAGGCC__AACCAGCC____AA__
3._POUND_4_/A___
____AAGGCC__AACCAGCC____AA__
4._POUND_4_/A___
____AAGGCC__AACCAGCC____AA__
5._PA_70_[PER]___
____AAGGCC__AACCAGCC____AA__
6._POUND_4_/A___
____AAGGCC__AACCAGCC____AA__
7._PA_70_[PER]___
____AAGGCC__AA__AGCC____AA__
8._POUND_4_/A___
____AAGGCC__AACCAGCC____AA__
9._PA_70_[PER]___
TTCCAAGGCCGGAACCAGCCGGGGAACC
10._POUND_4_/A___
TTCCAAGGCCGGAACCAGCCGGGGAACC
11._POUND_4_/A___
TTCCAAGGCCGGAACCAGCCGGGGAACC
12._POUND_4_/A___
TTCCAAGGCCGGAACCAGCCGGGGAACC
13._POUND_4_/A___
TTCCAAGGCCGGAACCAGCCGGGGAACC
14._POUND_4_/A___
TTCCAAGGCCGGAACCAGCCGGGGAACC
15._PA_46_[PER]___
____ACGGCC__AA__GGCC____AA__
16._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
17._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
18._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
19._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
20._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
21._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
22._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
23._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
24._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
25._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
26._PA_136_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAATTGGCGACCTTTCCGGGGTTAAGG
1._PA_70_[PER]___
AAAATTGGCGAC__TT__GG______GG
2._POUND_4_/A___
AAAATTGGCGAC__TT__GG______GG
3._POUND_4_/A___
AAAATTGGCGAC__TT__GG______GG
4._POUND_4_/A___
AAAATTGGCGAC__TT__GG______GG
5._PA_70_[PER]___
AAAATTGGCGAC__TT__GG______GG
6._POUND_4_/A___
AAAATTGGCG____TT__GG______GG
7._PA_70_[PER]___
AAAATTGGCGAC__TT__GG______GG
8._POUND_4_/A___
AAAATTGG__AC__TT__GG______GG
9._PA_70_[PER]___
AAAATTGGCGACCTTTCCGGGGTTAAGG
10._POUND_4_/A___
AAAATTGGCGACCTTTCCGGGGTTAAGG
11._POUND_4_/A___
AAAATTGGCGACCTTTCCGGGGTTAAGG
12._POUND_4_/A___
AAAATTGGCGACCTTTCCGGGGTTAAGG
13._POUND_4_/A___
AAAATTGGCG__CTTTCCGGGGTTAAGG
14._POUND_4_/A___
AAAATTGG__ACCTTTCCGGGGTTAAGG
15._PA_46_[PER]___
AAAACTGGCGAC__TT__________GG
16._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
19._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
20._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
21._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
22._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
23._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
24._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
25._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
26._PA_136_[PER]___
AACCTTGTCCACCTTTCCGGGGTTAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGAGCCCCGGGGTTTTCTCCCTGG
1._PA_70_[PER]___
__CC__AG__CC______TT____CTGG
2._POUND_4_/A___
__CC__AG__CC______TT____CTGG
3._POUND_4_/A___
__CC__AG__CC______TT____CTGG
4._POUND_4_/A___
__CC__AG__CC______TT____CTGG
5._PA_70_[PER]___
__CC__AG__CC______TT____CTGG
6._POUND_4_/A___
__CC__AG__CC______TT____CTGG
7._PA_70_[PER]___
__CC__AG__CC______TT____CTGG
8._POUND_4_/A___
__CC__AG__CC____________CTGG
9._PA_70_[PER]___
CCCCGGAGCTCCGGGGTTTTTTCCCTGG
10._POUND_4_/A___
CCCCGGAGCTCCGGGGTTTTTTCCCTGG
11._POUND_4_/A___
CCCCGGAGCTCCGGGGTTTTTTCCCTGG
12._POUND_4_/A___
CCCCGGAGCTCCGGGGTTTTTTCCCTGG
13._POUND_4_/A___
CCCCGGAGCTCCGGGGTTTTTTCCCTGG
14._POUND_4_/A___
CCCCGGAGCTCCGGGGTT__TTCCCTGG
15._PA_46_[PER]___
CCCC__AG__CC______TT____CTGG
16._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
17._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
18._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
19._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
20._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
21._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
22._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
23._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
24._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
25._PA_72_[PER]___
CCCCGGAGCCCCGGGGTTTT__CCCTGG
26._PA_136_[PER]___
CCCC__AACCCCGGGGTTTTCTCTCTGG
 43              
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_70_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_70_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_70_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_70_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._POUND_4_/A___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_46_[PER]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._PA_72_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._PA_136_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_70_[PER] RUQ_33

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_70_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016
Population Assignment: 

2._POUND_4_/A

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8402 8
 Dapeng Zhang, 2016

3._POUND_4_/A

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8402 10
 Dapeng Zhang, 2016

4._POUND_4_/A

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8402 13
 Dapeng Zhang, 2016

5._PA_70_[PER] RUQ_33

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._POUND_4_/A

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8401 8
 Dapeng Zhang, 2016

7._PA_70_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

8._POUND_4_/A

identical
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8402 5
 Dapeng Zhang, 2016

9._PA_70_[PER] GC-04-053-3-17

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

10._POUND_4_/A GC-08-159-4-02

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._POUND_4_/A GC-08-159-4-02

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._POUND_4_/A GC-08-159-4-02

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._POUND_4_/A GC-08-158-4-01

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._POUND_4_/A GC-08-159-4-02

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._PA_46_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

16._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._PA_72_[PER] GC-08-051-1-62

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._PA_136_[PER] RUQ_1131

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484