SNP Profiles matching SJ 1 /40 [POU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GT	TT	GG	CC	CC	AA	CC	AG	GG	TT	CC
1._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
2._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
3._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
4._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
5._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
6._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
7._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
8._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
9._EET_233_[ECU]	_	_	CC	GT	CT	_	CC	CC	_	CC	_	_	TT	_
10._EET_233_[ECU]	_	_	_	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
11._RUQ_1517	_	_	CC	GT	CT	_	CC	CC	AA	CC	_	_	TT	_
12._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
13._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
14._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
15._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
16._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
17._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
18._GC-08-088-2-11	TT	CC	CC	GT	TT	GG	CC	CC	AG	CC	AG	GG	AT	CC
19._GC-05-085-2-36	TT	AC	CC	GT	CT	GG	CC	CC	AA	CC	AG	GG	TT	CC
20._GC-05-178-4-31	TT	AC	CC	GT	CT	GG	CC	CC	AA	CC	AG	GG	TT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CT	GT	CG	CC	CC	CT	CT	GG	GG	TT	AC	GG
1._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
2._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
3._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
4._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
5._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
6._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
7._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
8._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
9._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
10._EET_233_[ECU]	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
11._RUQ_1517	AG	AC	CT	GT	CG	CC	_	CT	_	GG	_	_	_	GG
12._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
13._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
14._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
15._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
16._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
17._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
18._GC-08-088-2-11	AG	AC	CT	GT	CG	CC	CC	TT	CT	GG	AG	TT	AC	GG
19._GC-05-085-2-36	AG	AC	CT	GT	CG	CC	CT	CT	TT	GG	AG	TT	AC	GG
20._GC-05-178-4-31	AG	AC	CT	GT	CG	CC	CT	CT	TT	GG	AG	TT	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CG	TT	AG	CC	GG	AG	TT	GT	CT	CC	CT	CG	GG	X_X
1._EET_233_[ECU]	_	TT	AG	CC	_	_	_	_	_	_	CT	CC	GG	X_X
2._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
3._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
4._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
5._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
6._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
7._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
8._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
9._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
10._EET_233_[ECU]	_	TT	AG	CC	_	_	_	GG	_	_	CT	CC	GG	X_X
11._RUQ_1517	_	TT	AG	CT	_	_	_	GG	_	_	CT	CC	GG	X_X
12._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
13._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
14._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
15._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
16._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
17._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
18._GC-08-088-2-11	CG	CT	AG	CC	GG	AG	TT	GT	TT	CC	TT	CG	AG	X_X
19._GC-05-085-2-36	GG	TT	AG	CC	GG	AG	TT	_	TT	CC	CT	CC	GG	X_X
20._GC-05-178-4-31	GG	TT	AG	CC	GG	AG	TT	GG	_	CC	CT	CC	GG	X_X

Input profile: SJ_1_/40_[POU] RUQ_1438

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EET_233_[ECU]

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 3 > FP

Dapeng Zhang, 2016

3._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 5

Dapeng Zhang, 2016

4._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5431 4

Dapeng Zhang, 2016

5._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5402 1 > FP

Dapeng Zhang, 2016

6._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5402 2

Dapeng Zhang, 2016

7._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 4

Dapeng Zhang, 2016

8._EET_233_[ECU]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 2 > FP

Dapeng Zhang, 2016

9._EET_233_[ECU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 5 > FP

Dapeng Zhang, 2016

10._EET_233_[ECU]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5236 3 > FP

Dapeng Zhang, 2016

11._EET_233_[ECU] RUQ_1517

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

14._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

15._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

16._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

18._EB_1516 GC-08-088-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

19._EET_233_[ECU] GC-05-085-2-36

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 2, Rep: 36, Tree: PL1

Notes: PL1 FP1

20._EET_233_[ECU] GC-05-178-4-31

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484